Chlamydia trachomatis D-LC: CTDLC_0413
Help
Entry
CTDLC_0413 CDS
T01901
Symbol
pmpB
Name
(GenBank) Polymorphic outer membrane protein
Organism
ctf
Chlamydia trachomatis D-LC
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ChlamPMP_M
Chlam_PMP
Autotransporter
Motif
Other DBs
NCBI-ProteinID:
ADI52101
LinkDB
All DBs
Position
474332..479596
Genome browser
AA seq
1754 aa
AA seq
DB search
MSSMKWLSATAVFAAVLPSVSGFCFPEPKELNFSRVGTSSSTTFTETVGEAGAEYIVSGN
ASFTKFTNIPTTDTTTPTNSNSSSSNGETASVSEDSDSTTTTPDPKGGGAFYNAHSGVLS
FMTRSGTEGSLTLSEIKITGEGGAIFSQGELLFTDLTGLTIQNNLSQLSGGAIFGESTIS
LSGITKATFSSNSAEVPAPVKKPTEPKAQTASETSGSSSSSGNDSVSSPSSSRAEPAAAN
LQSHFICATATPAAQTDTETSTPSHKPGSGGAIYAKGDLTIADSQEVLFSINKATKDGGA
IFAEKDVSFENITSLKVQTNGAEEKGGAIYAKGDLSIQSSKQSLFNSNYSKQGGGALYVE
GDINFQDLEEIRIKYNKAGTFETKKITLPKAQASAGNADAWASSSPQSGSGATTVSNSGD
SSSGSDSDTSETVPATAKGGGLYTDKNLSITNITGIIEIANNKATDVGGGAYVKGTLTCE
NSHRLQFLKNSSDKQGGGIYGEDNITLSNLTGKTLFQENTAKEEGGGLFIKGTDKALTMT
GLDSFCLINNTSEKHGGGAFVTKEISQTYTSDVETIPGITPVHGETVITGNKSTGGNGGG
VCTKRLALSNLQSISISGNSAAENGGGAHTCPDSFPTADTAEQPAAASAATSTPESAPVV
STALSTPSSSTVSSLTLLAASSQASPATSNKETQDPNADTDLLIDYVVDTTISKNTAKKG
GGIYAKKAKMSRIDQLNISENSATEIGGGICCKESLELDALVSLSVTENLVGKEGGGLHA
KTVNISNLKSGFSFSNNKANSSSTGVATTASAPAAAAASLQAAAAAVPSSPATPTYSGVV
GGAIYGEKVTFSQCSGTCQFSGNQAIDNNPSQSSLNVQGGAIYAKTSLSIGSSDAGTSYI
FSGNSVSTGKSQTTGQIAGGAIYSPTVTLNCPATFSNNTASMATPKTSSEDGSSGNSIKD
TIGGAIAGTAITLSGVSRFSGNTADLGAAIGTLANANTPSATSGSQNSITEKITLENGSF
IFERNQANKRGAIYSPSVSIKGNNITFNQNTSTHDGSAIYFTKDATIESLGSVLFTGNNV
TATQASSATSGQNTNTANYGAAIFGDPGTTQSSQTDAILTLLASSGNITFSNNSLQNNQG
DTPASKFCSIAGYVKLSLQAAKGKTISFFDCVHTSTKKIGSTQNVYETLDINKEENSNPY
TGTIVFSSELHENKSYIPQNAILHNGTLVLKEKTELHVVSFEQKEGSKLIMKPGAVLSNQ
NIANGALVINGLTIDLSSMGTPQAGEIFSPPELRIVATTSSASGGSGVSSSIPTNPKRIS
AAAPSGSAATTPTMSENKVFLTGDLTLIDPNGNFYQNPMLGSDLDVPLIKLPTNTSDVQV
YDLTLSGDLFPQKGYMGTWTLDSNPQTGKLQARWTFDTYRRWVYIPRDNHFYANSILGSQ
NSMIVVKQGLINNMLNNARFDDIAYNNFWVSGVGTFLAQQGTPLSEEFSYYSRGTSVAID
AKPRQDFILGAAFSKMVGKTKAIKKMHNYFHKGSEYSYQASVYGGKFLYFLLNKQHGWAL
PFLIQGVVSYGHIKHDTTTLYPSIHERNKGDWEDLGWLADLRISMDLKEPSKDSSKRITV
YGELEYSSIRQKQFTEIDYDPRHFDDCAYRNLSLPVGCAVEGAIMNCNILMYNKLALAYM
PSIYRNNPVCKYRVLSSNEAGQVICGVPTRTSARAEYSTQLYLGPFWTLYGNYTIDVGMY
TLSQMTSCGARMIF
NT seq
5265 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttctatgaaatggctgtcagctactgcggtgtttgctgctgttctcccctcagtt
tcagggttttgcttcccagaacctaaagaattaaatttctctcgcgtaggaacttcttcc
tctaccacttttactgaaacagttggagaagctggggcagaatatatcgtctctggtaac
gcatctttcacaaaatttaccaacattcctactaccgatacaacaactcccacgaactca
aactcctctagctctaacggagagactgcttccgtttctgaggatagtgactctacaaca
acgactcctgatcctaaaggtggcggcgccttttataacgcgcactccggagttttatcc
tttatgacacgatcaggaacagaaggttccttaactctgtctgagataaaaataactggt
gaaggcggtgctatcttctctcaaggagagctgctatttacagatctgacaggtctaacc
atccaaaataacttatcccagctatccggaggagcgatttttggagaatctacaatctcc
ctatcagggattactaaagcgactttctcctccaactctgcagaagttcctgctcctgtt
aagaaacctacagaacctaaagctcaaacagcaagcgaaacgtcgggttctagtagttct
agcggaaatgattcggtgtcttcccccagttccagtagagctgaacccgcagcagctaat
cttcaaagtcactttatttgtgctacagctactcctgctgctcaaaccgatacagaaaca
tcaactccctctcataagccaggatctgggggagctatctatgctaaaggcgaccttact
atcgcagactctcaagaggtactattctcaataaataaagctactaaagatggaggagcg
atctttgctgagaaagatgtttctttcgagaatattacatcattaaaagtacaaactaac
ggtgctgaagaaaagggaggagctatctatgctaaaggtgacctctcaattcaatcttct
aaacagagtctttttaattctaactacagtaaacaaggtggtggggctctatatgttgaa
ggagatataaacttccaagatcttgaagaaattcgcattaagtacaataaagctggaacg
ttcgaaacaaaaaaaatcactttaccaaaagctcaagcatctgcaggaaatgcagatgct
tgggcctcttcctctcctcaatctggttctggagcaactacagtctccaactcaggagac
tctagctctggctcagactcggatacctcagaaacagttccagccacagctaaaggcggt
gggctttatactgataagaatctttcgattactaacatcacaggaattatcgaaattgca
aataacaaagcgacagatgttggaggtggtgcttacgtaaaaggaacccttacttgtgaa
aactctcaccgtctacaatttttgaaaaactcttccgataaacaaggtggaggaatctac
ggagaagacaacatcaccctatctaatttgacagggaagactctattccaagagaatact
gccaaagaagagggcggtggactcttcataaaaggtacagataaagctcttacaatgaca
ggactggatagtttctgtttaattaataacacatcagaaaaacatggtggtggagccttt
gttaccaaagaaatctctcagacttacacctctgatgtggaaacaattccaggaatcacg
cctgtacatggtgaaacagtcattactggcaataaatctacaggaggtaatggtggaggc
gtgtgtacaaaacgtcttgccttatctaaccttcaaagcatttctatatccgggaattct
gcagctgaaaatggtggtggagcccacacatgcccagatagcttcccaacggcggatact
gcagaacagcccgcagcagcttctgccgcgacgtctactcccgagtctgccccagtggtc
tcaactgctctaagcacaccttcatcttctaccgtctcttcattaaccttactagcagcc
tcttcacaagcctctcctgcaacctctaataaggaaactcaagatcctaatgctgataca
gacttattgatcgattatgtagttgatacgactatcagcaaaaacactgctaagaaaggc
ggtggaatctatgctaaaaaagccaagatgtcccgcatagaccaactgaatatctctgag
aactccgctacagagataggtggaggtatctgctgtaaagaatctttagaactagatgcc
ctagtctccttatctgtaacagagaaccttgttgggaaagaaggtggaggcttacatgct
aaaactgtaaatatttctaatctgaaatcaggcttctctttctcgaacaacaaagcaaac
tcctcatccacaggagtcgcaacaacagcttcagcacctgctgcagctgctgcttcccta
caagcagccgcagcagccgtaccatcatctccagcaacaccaacttattcaggtgtagta
ggaggagctatctatggagaaaaggttacattctctcaatgtagcgggacttgtcagttc
tctgggaaccaagctatcgataacaatccctcccaatcatcgttgaacgtacaaggagga
gccatctatgccaaaacctctttgtctattggatcttccgatgctggaacctcctatatt
ttctcggggaacagtgtctccactgggaaatctcaaacaacagggcaaatagcgggagga
gcgatctactcccctactgttacattgaattgtcctgcgacattctctaacaatacagcc
tctatggctacaccaaagacttcttctgaagatggatcctcaggaaattctattaaagat
accattggaggagccattgcagggacagccattaccctatctggagtctctcgattttca
gggaatacggctgatttaggagctgcaataggaactctagctaatgcaaatacacccagt
gcaactagcggatctcaaaatagcattacagaaaaaattactttagaaaacggttctttt
atttttgaaagaaaccaagctaataaacgtggagcgatttactctcctagcgtttccatt
aaagggaataatattaccttcaatcaaaatacatccactcatgatggaagtgctatctac
tttacaaaagatgctacgattgagtctttaggatctgttctttttacaggaaataacgtt
acagctacacaagctagttctgcaacatctggacaaaatacaaatactgccaactatggg
gcagccatctttggagatccaggaaccactcaatcgtctcaaacagatgccattttaacc
cttcttgcttcttctggaaacattacttttagcaacaacagtttacagaataaccaaggt
gatactcccgctagcaagttttgtagtattgcaggatacgtcaaactctctctacaagcc
gctaaagggaagactattagctttttcgattgtgtgcacacctctaccaaaaaaataggt
tcaacacaaaacgtttatgaaactttagatattaataaagaagagaacagtaatccatat
acaggaactattgtgttctcttctgaattacatgaaaacaaatcttacatcccacagaat
gcaatccttcacaacggaactttagttcttaaagagaaaacagaactccacgtagtctct
tttgagcagaaagaagggtctaaattaattatgaaacccggagctgtgttatctaaccaa
aacatagctaacggagctctagttatcaatgggttaacgattgatctttccagtatgggg
actcctcaagcaggggaaatcttctctcctccagaattacgtatcgttgccacgacctct
agtgcatccggaggaagcggggtcagcagtagtataccaacaaatcctaaaaggatttct
gcagcagcgccttcaggttctgccgcaactactccaactatgagcgagaacaaagttttc
ctaacaggagaccttactttaatagatcctaatggaaacttttaccaaaaccctatgtta
ggaagcgatctagatgtaccactaattaagcttccgactaacacaagtgacgtccaagtc
tatgatttaactttatctggggatcttttccctcagaaagggtacatgggaacctggaca
ttagattctaatccacaaacagggaaacttcaagccagatggacattcgatacctatcgt
cgctgggtatacatacctagggataatcatttttatgcgaactctatcttaggctcccaa
aactcaatgattgttgtgaagcaagggcttatcaacaacatgttgaataatgcccgcttc
gatgatatcgcttacaataacttctgggtttcaggagtaggaactttcttagctcaacaa
ggaactcctctttccgaagaattcagttactacagccgcggaacttcagttgccatcgat
gccaaacctagacaagattttatcctaggagctgcatttagtaagatggtggggaaaacc
aaagccatcaaaaaaatgcataattacttccataagggctctgagtactcttaccaagct
tctgtctatggaggtaaattcctgtatttcttgctcaataagcaacatggttgggcactt
cctttcctaatacaaggagtcgtgtcctatggacatattaaacatgatacaacaacactt
tacccttctatccatgaaagaaataaaggagattgggaagatttaggatggttagcggat
cttcgtatctctatggatcttaaagaaccttctaaagattcttctaaacggatcactgtc
tatggggaacttgagtattccagcattcgccagaaacagttcacagaaatcgattacgat
ccaagacacttcgatgattgtgcttacagaaatctgtcgcttcctgtgggatgcgctgtc
gaaggagctatcatgaactgtaatattcttatgtataataagcttgcattagcctacatg
ccttctatctacagaaataatcctgtctgtaaatatcgggtattgtcttcgaatgaagct
ggtcaagttatctgcggagtgccaactagaacctctgctagagcagaatacagtactcaa
ctatatcttggtcccttctggactctctacggaaactatactatcgatgtaggcatgtat
acgctatcgcaaatgactagctgcggtgctcgcatgatcttctaa
DBGET
integrated database retrieval system
