Chlamydia trachomatis RC-F(s)/342: CTRC342_04185
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Entry
CTRC342_04185 CDS
T02764
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ctfs
Chlamydia trachomatis RC-F(s)/342
Pathway
ctfs03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ctfs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CTRC342_04185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ctfs03400
]
CTRC342_04185
Enzymes [BR:
ctfs01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CTRC342_04185
DNA repair and recombination proteins [BR:
ctfs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CTRC342_04185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
DUF3638
RecG_dom3_C
AAA_30
AAA_19
ERCC3_RAD25_C
PhoH
Motif
Other DBs
NCBI-ProteinID:
AGR99791
LinkDB
All DBs
Position
complement(911074..914319)
Genome browser
AA seq
1081 aa
AA seq
DB search
MDFDPTGINFSSFLSLKKTKLPLLVENLHSGARSFVIAKLFKELRRSIVVITTPTKLDDV
FEDLSTLLKETPLEFPASEIDLSPKLVNIDAVGKRDHILYSLQKQQTPVICITTLKALLE
RTPSPESLIQDHLELRVGEELDPDTLLDLCKNLGYRHEALAREKGDFAFRGGIVDIFPLS
SPEPFRIEFWGDRIASIRAYNPSDQLSTGKLSQITLSPATAIIPTDKLSHSLLDYFEAFP
LCIFDGISSLEDNFSDIAGILSSLPKRFQPIQDLCRKILHASIPLFFEENVFPNILSNKD
TGLTLEVFHEKIAIQRVSLPFIYPSALIETSQEPNPLLAFLKTFQDLCSGSSLSLALYSP
NAKSLKEAHDLAGTLIKDSQIYDYPKTLSSSFALVESRFAAISLSEFTASKVLRRQKQRN
YFSTTTEEVYVPVPGETVVHLHNGIGKFIGIEKKPNHLNIETDYLVLEYADRARLYVPSD
QSYLISRYVGASEKAPDLHHLNGAKWRRSRELSEKSVILYAEKLIQMEAQRSTANSFIYP
PHGEEVIKFAESFPYEETPDQLKAIDQIYADMMSDKLMDRLICGDAGFGKTEIIMRAAVK
AVCDGQKQVIVMVPTTILANQHFETFSQRMAGLPITIGMLSRFSQGKAMKKTLEDIAQGK
IDILIGTHKVINKAIEFYNPGLLIIDEEQRFGVKAKDALKERYPTIDCLTVSATPIPRTL
YLSLSGARDLSLITMPPLDRLPVSTFVMEHSEETLSAAIRHELLRGGQVYVIHNRIESIF
RLGETIRTLIPEARIGIAHGQMHSEELASIFYKFKTQQTNVLVATALIENGIDIPNANTI
LIDHADKFGMADLYQMKGRVGRWNKKAYCYFLVSHLDRLSGPASKRLEALNKQEYGGGMK
IALHDLEIRGAGNILGTDQSGHISAVGFNLYCKLLKKAVAALKHKQKPMLFHDDVKIEFP
YPSRIPEDYIDLASMRIEFYQKIGNAESKEELEAIEEELLDRFGPLPEAVYWLLALAQIR
LIALKYHLSSIKGTGNALYIQQYHDKDKHIQKTLPYSLSPTPELLVKEVQESIEKAFPKK
H
NT seq
3246 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgacccgactggtataaatttttctagtttcctttcgttaaaaaaaactaag
ctccctcttcttgtggaaaatcttcactcaggagcaaggtcttttgttatagcgaaactg
ttcaaagagcttcgccgttctatcgttgtgataacgacgcccacgaaactcgatgatgta
tttgaggatctctctactctccttaaagagactcctcttgaattcccagcctcggagata
gatttatctcctaagctggtaaacatcgatgctgtagggaaaagggatcacattctgtac
tctcttcagaaacagcagactccggttatctgcattacaacattaaaagctttgctagaa
aggactccttctccagaatccttgatacaagatcatctcgaacttcgagtaggcgaagag
ctcgatccagataccctattagatctttgtaaaaatctggggtatcggcatgaagccttg
gcccgagaaaaaggggattttgcttttcgaggagggattgtagatattttccctctctcc
tctccagaacctttccgtatagaattttggggagatcgcattgcgtctattcgggcttac
aatccttctgatcaactgtccacagggaagctttcacagattacgctttctcctgctaca
gcaatcatccccacagataaattatcccattctcttttagattatttcgaggctttcccc
ctttgcatcttcgatggaatctcctctctagaagacaatttctcagacatcgcaggtatc
ttatcctcacttccaaagcgctttcagcctattcaggatttatgccgaaaaatacttcac
gcatctatcccgttattttttgaagaaaatgtatttcctaacattctttccaacaaggat
accgggctcactctagaagtttttcatgaaaagatcgctatccaaagagtttctttaccc
tttatctatccctcagcactcatagaaacaagccaagaaccaaaccctttgctcgcattt
ctaaaaactttccaagatttgtgctctggaagctctctctccttagccttgtatagtccc
aatgccaaatctttaaaagaggcgcatgatctcgcaggaaccttaatcaaagattcgcaa
atttatgactatccaaaaactctttcttctagttttgctttggtagagtctagattcgct
gcgatttctctttcagaatttaccgccagcaaggtccttcgcagacaaaaacagcgcaac
tatttttctactacgacggaggaagtgtatgttcctgtcccgggagagactgttgttcat
ttgcataatggcattgggaaatttatcggcatagaaaaaaagccaaatcacctcaatatt
gaaaccgattatttggttttagagtatgcggatcgagctcggctgtatgtcccttcagac
caatcttatctcatttctcgctatgttggcgcttcagaaaaagctcccgatctacatcat
ctcaatggagcaaagtggagacgatcccgagagctttccgaaaaatctgtgatcctttat
gcagaaaagctgattcaaatggaggctcaacgttctacagcaaactcgttcatatatcct
cctcatggggaagaggttatcaagtttgctgaaagtttcccctatgaagaaacccccgac
cagctcaaagctattgatcaaatctacgcagatatgatgtccgataaactcatggatcgc
cttatctgcggggatgctggatttggaaagaccgagatcatcatgcgagcagcggtaaag
gctgtgtgtgatggccaaaagcaggtgatcgttatggtccctacaacaatcctagctaac
caacattttgaaacgttttcccagcggatggcagggcttcccatcaccattggcatgctt
tcccgattttcacaagggaaagctatgaagaaaaccttagaagatattgctcaagggaaa
attgatatcttaatcggcacccataaagtcattaataaagccattgaattttataatccc
gggctactcattattgatgaggaacaacgctttggagtgaaagctaaggatgctctaaaa
gaacgctatcctactatagattgccttaccgtttctgccactcccattccgcgcacctta
tatctttccttatctggagcaagagacctatcccttattacaatgcctcccctagacagg
ctacctgtgagcacttttgtcatggagcattccgaagaaactttatccgcagcgatacga
catgaacttctgcggggagggcaggtttacgttattcataatcgaatcgaaagtattttt
cgtttaggagaaaccattcggactttaattccggaagcccgtattggtattgcacatgga
caaatgcactcggaagaactcgctagtattttttacaagtttaaaacccaacaaactaat
gttcttgtcgcgaccgcgctgatcgaaaatggtatcgatattcctaatgccaataccatt
ttaatcgatcatgcagataaattcgggatggccgatttatatcaaatgaaaggacgtgtt
gggcgttggaacaaaaaagcgtactgctattttcttgtttcccatttagaccgcctctct
ggtccagcctctaaacgcttggaggctctgaataagcaagaatatggcggagggatgaaa
atcgcacttcatgacttagaaatccgcggagcggggaatattttaggaacggatcagtct
ggtcacattagtgctgtgggctttaacctttattgcaaattactgaaaaaagctgtcgct
gccctgaagcataagcagaaacctatgcttttccacgacgatgtaaaaattgaatttcct
tatccttcacggattccagaagactatatagacctagcttctatgcgcatcgagttttat
caaaaaattgggaatgcggaatctaaagaagagttagaagctatagaagaagaactttta
gatagatttgggcctttacccgaagccgtatattggttgttggccttagcacagattcgt
ttaattgctctaaagtaccatctttcgagcattaaggggacaggaaatgctttatacatc
cagcaatatcacgataaagacaaacacattcaaaaaacattaccttactcgctctcacca
acacccgaactgttagtgaaagaggtccaagaatcgatagaaaaagcttttcctaaaaaa
cactaa
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