Acetivibrio thermocellus ATCC 27405: Cthe_0250
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Entry
Cthe_0250 CDS
T00474
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cth
Acetivibrio thermocellus ATCC 27405
Brite
KEGG Orthology (KO) [BR:
cth00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cth03016
]
Cthe_0250
Enzymes [BR:
cth01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Cthe_0250
Transfer RNA biogenesis [BR:
cth03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Cthe_0250
Prokaryotic type
tRNA splicing ligases
Cthe_0250
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ABN51489
UniProt:
A3DC10
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All DBs
Position
305803..306993
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AA seq
396 aa
AA seq
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MIEIKGKYNTAKVFTNNVEPEAMAQILELCNQEFVKDSVIRIMPDTHAGAGCTIGTTMTI
DDKIVPNLVGVDIGCGMETIKLKNKNIELSKLDKVIHEFIPSGFDIRKKEHPYVRNINLD
ELLCKKHVDINRAKLSIGTLGGGNHFIEVNKDSEGNLYLVVHSGSRHLGKQVAEYYQELG
YKELVKNTEVIKEIIAKLKAEGREKEIEKEIKKIKPPNISKQLAYVQGKSYEDYLADMKL
VQKFAVLNRKAIVDEIVRRMNFKIEEQFTTIHNYIDLDSMILRKGAISARKGERVLIPIN
MRDGSLICIGKGNKDWNYSAPHGAGRLMSRAKAKEVITLKEFKESMKGIYSTTVNKSTID
ECPMAYKPMEEIIENIQDTVEIVDIIKPIYNFKAAE
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atgatagaaattaaaggaaaatataatacggcaaaagtttttaccaacaacgttgaaccg
gaggcaatggctcagatattggaactttgcaaccaggagtttgtaaaggacagtgtaatc
agaattatgcctgatacccatgccggtgcaggttgtaccattggaaccaccatgaccatt
gacgacaaaattgtgccaaatctggtgggtgttgatataggctgcggaatggagaccata
aagctgaaaaataaaaatattgaattgagcaagctggacaaagtaattcatgaatttatc
ccgtcgggttttgacattcgcaaaaaagagcatccgtatgtcaggaatattaatttggat
gagctattgtgcaaaaaacacgtggatataaaccgggcaaagctgagtattggcaccttg
ggcggtggcaaccattttattgaggtgaacaaagacagtgagggaaacctgtatcttgtg
gtgcattcgggaagcagacatctgggaaagcaggttgcggagtattatcaggagttgggt
tacaaggagcttgtaaaaaacactgaagtgattaaagaaattatagcaaagctgaaagcg
gaaggccgtgaaaaggaaatcgagaaggaaataaaaaaaatcaagccgccgaatataagc
aagcagcttgcctatgtccagggcaaaagttatgaggactatcttgccgacatgaaattg
gtgcagaaatttgcggtattgaaccgcaaagcaattgtggatgagattgtgaggcgcatg
aattttaaaattgaagagcagtttaccactattcataattatattgacttagacagcatg
atactcaggaaaggtgccatttcagcacgcaaaggggaaagagtgctgattccgattaac
atgagggacggaagccttatctgtatcggcaaaggcaacaaggattggaactattccgcg
ccccatggggcgggaagactgatgagcagggctaaggcaaaagaagttataacgcttaag
gaattcaaagaatcaatgaagggaatttattcaacaacggtcaacaaatccaccattgat
gaatgtcccatggcttacaagcctatggaggaaatcattgaaaatattcaggacaccgtt
gaaattgtagatattattaagccaatatacaactttaaagcggctgaatag
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