Acetivibrio thermocellus ATCC 27405: Cthe_0309
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Entry
Cthe_0309 CDS
T00474
Name
(GenBank) excinuclease ABC, B subunit
KO
K03702
excinuclease ABC subunit B
Organism
cth
Acetivibrio thermocellus ATCC 27405
Pathway
cth03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Cthe_0309
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cth03400
]
Cthe_0309
DNA repair and recombination proteins [BR:
cth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cthe_0309
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Cthe_0309
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
UvrB
Helicase_C
ResIII
UVR
DEAD
Herpes_BBRF1
DUF3071
AAA_30
Kinesin
AAA_22
SWI2_SNF2
AAA_16
Microtub_bd
DUF4391
EMC3_TMCO1
DUF87
Motif
Other DBs
NCBI-ProteinID:
ABN51547
UniProt:
A3DC68
LinkDB
All DBs
Position
386019..388001
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AA seq
660 aa
AA seq
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MHKFKLVSDYKPCGDQPEAIDKLVEGINRGYRGQTLLGVTGSGKTFTMANVIERVQKPTL
VIAHNKTLAAQLCSEFKEFFPNNCVEYFVSYYDYYQPEAYIPATDTYIEKDSSINDEIDK
LRHSATAALFERRDVIIVASVSCIYGLGDPEDYTDLMLSLRPGMIKDRDEIIRKLVDIQY
ERNEIDFKRGKFRVRGDILEIFPASSSDKVIRVEFFGEEIDRITEVDSLTGEITGVCSHV
AIFPASHYATTKAKMQRAIASIEQELEERVRELKSQGKLLEAQRLEQRTRYDLEMMQEIG
FCQGIENYSRHISGRAPGSPPFTLIDYFPKDFLLIIDESHVTIPQIGAMYNGDRSRKESL
VEYGFRLPSAFDNRPLTFEEFEKKINQVIFVSATPAKYEREHSQQIVEQIIRPTGLLDPE
IVVKPVKGQIDDLIGEISERVQKNQRVMITTLTKKMAEDLTDYLRELDFKVEYLHSDIDT
IERMEIIRNLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSETSLIQTIGRA
ARNVEGKVIMYADTITDSMRRAIDETNRRRKIQSEYNQKHGITPKSVQKGIRDVIEITKV
AEEDAKYFIRGDEDSMDKDEVLDLIEKLTNEMKAAAAELQFERAAELRDKIAELKKKIGA
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgcataaatttaaactggtgtctgattacaaaccctgcggagatcaaccggaggctata
gataaacttgtggaaggcattaacaggggatacaggggtcagactcttttgggtgtgacc
ggttccggtaaaacatttaccatggccaatgttattgaaagggttcagaaacccaccctt
gtgattgcccacaacaagactcttgcggcacagctttgcagtgagtttaaggagtttttt
cccaacaactgtgttgaatattttgtaagctattatgactattaccagccggaggcttat
attcccgccaccgatacctatattgagaaggattcgtcgataaatgacgagattgacaag
ctgaggcactcggctactgctgcgctgtttgaacgaagggacgttataatagttgcaagc
gtttcgtgtatttacggtttgggagacccggaagattatactgatttgatgctttcgttg
cgtcccggcatgataaaggacagggatgaaataatcaggaagctggtggacattcagtac
gaaagaaatgaaattgattttaaaagaggaaaattcagggtcaggggtgacatactggag
atattcccggcttcatcttctgacaaagtgatacgggtggagtttttcggagaagaaatt
gataggattaccgaagttgattcactgaccggtgaaataaccggagtatgctctcatgtt
gccatttttccggcttcccactatgccacgacaaaggctaaaatgcaaagggccatagct
tcaattgaacaggagcttgaggagcgtgtcagggaattaaaatcccagggaaaactcctt
gaagcccagaggcttgaacagcggacaaggtatgaccttgaaatgatgcaggaaataggg
ttttgccaaggtatagagaattattcgagacatataagcggaagagctccgggcagtccg
ccttttacgcttattgattacttcccgaaggattttttgctgataattgacgagtcccat
gtgaccattccccagattggagccatgtacaacggtgaccggtcgagaaaggaatccctt
gtggaatacggtttcaggctcccttcggcttttgacaacagaccgcttacgtttgaggag
tttgagaaaaaaatcaaccaggttatatttgtcagtgctacgccggcaaagtatgaaagg
gagcattcgcagcagatagtggagcagattataaggcctacagggttgcttgatcctgag
attgttgtgaaacctgtaaaaggtcagattgacgacctgattggggaaataagtgaaaga
gtacagaaaaatcagagagttatgattaccacccttaccaaaaagatggcggaggatttg
acggattatttgagggagcttgactttaaagttgaatatttgcattctgacattgatacc
attgagagaatggaaataatacgaaacttaagacttggagtttttgacgtcctggttggc
ataaatttgctaagagaaggtctggatattccggaagtgtcccttgtggccattctggat
gccgacaaggaaggcttcctgcgttcggagacctcattgattcagactataggaagagcg
gccagaaatgttgagggaaaagtcataatgtatgccgataccattacggactcgatgaga
agagccattgacgagaccaacagaagaagaaagatacagtcggaatacaatcagaagcac
ggtataacgccgaagagcgttcaaaagggtataagggatgtaattgaaattacaaaagtt
gctgaagaagatgcaaagtactttattcgcggcgacgaggattcgatggataaggatgaa
gttttggaccttattgaaaaactcaccaatgaaatgaaggcggcagcggcggaacttcaa
tttgaacgggctgcggagctcagggacaaaattgccgaactgaaaaagaaaataggagct
taa
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