Acetivibrio thermocellus ATCC 27405: Cthe_0996
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Entry
Cthe_0996 CDS
T00474
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K03763
DNA polymerase III subunit alpha, Gram-positive type [EC:
2.7.7.7
]
Organism
cth
Acetivibrio thermocellus ATCC 27405
Pathway
cth03030
DNA replication
cth03430
Mismatch repair
cth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Cthe_0996
03430 Mismatch repair
Cthe_0996
03440 Homologous recombination
Cthe_0996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cth03032
]
Cthe_0996
03400 DNA repair and recombination proteins [BR:
cth03400
]
Cthe_0996
Enzymes [BR:
cth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Cthe_0996
DNA replication proteins [BR:
cth03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Cthe_0996
DNA repair and recombination proteins [BR:
cth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Cthe_0996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
RNase_T
PHP
DNA_pol3_a_NII
DNA_pol3_finger
HHH_6
DNA_pol3_a_NI
Rv2179c-like
RNase_H_2
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABN52228
UniProt:
A3DE49
LinkDB
All DBs
Position
complement(1189887..1194215)
Genome browser
AA seq
1442 aa
AA seq
DB search
MQSVLVKERKLSELFPEVINNENERELFDTARIQNINVYKKSRKLEIFIVSDTLIPAKTL
DSVEQSFKKLFELEQVHLRVSFNVELSIEEALEKYWDSILYIVKKNIALCRGILSGCKWK
IEDKKLYIYLKTKGTEILKCKSCDTLIENIIKECFGLEIKVEFKDFEIDEDKINEYIEFK
ENEEAKIVTDTVIKNNEKTQKTEKSEKTSGESKSNVSSAGGEKSEVIFGKNFNDSVMNMS
EVTQDSGRVVVKGEIIRTEARELKSGKLLYVFDVTDFTNSLTVKIFLDKDKSGSVIERLK
EKANVKIRGEAQYDKFSRELSILASDIVEVPVQVRTDNAAEKRVELHLHTQMSAMDGVTS
VGELIKRAAQWGHKAIAVTDHGVVQAYPEACEAAKKNKIKVIYGIEAYLLDDSVPIVYHA
NGHPVDGEFVVFDIETTGLSADKDKITEIGAVKIKEGKIVDTFSTFVNPEIPIPEFVVKL
TGITDDMVSDAPTIDKVLPEFLEFVGTSPLVAHNAVFDTGFIRHNARLINRNVDNPVIDT
LELSRQMFPELKKHKLDVVAKHLGVSLENHHRALDDAKACGEIFIKCLEILAEKNVKTID
DIQNVFEGCWNYQKANSYHAIILVKNYVGLRNLYKIVSKTHLEYFHKRPRLPRKLLMMHR
EGLILGSACEAGELYRAILENKDEDEISRIVKFYDYLEIQPLGNNRFLVESGKVNSEEDL
KNINRKIVALGEKYNKPVVATCDVHFMDPQDEVFRRILMAGQGFSDADNQAPLYFRTTDE
MLEEFEYLGREKCYEVVVTNTNLIADMCEDILPIPEGTFPPKIEGAEEEIRMLAENKARE
IYGDPLPEIVEKRMEKELNSIIKNGFSVMYIIAQKLVWKSLSDGYLVGSRGSVGSSFVAY
LIGITEVNSLPPHYICENCKYSEFIEDGSYGCGFDMPEKECPRCGKILKKDGYDIPFETF
LGFEGDKEPDIDLNFSGEYQPIAHKYTEELFGVGHVYRAGTIGTIAEKTAYGFVKNYLDE
RGIVATNAEINRLVKGCTGVKRTTGQHPGGVMIVPQDREIYEFCPIQYPADDPDSGTITT
HFDYHSISGRLLKLDILGHDDPTVIKMLEDLTGVNARTIPIGEKRTMGIFSSTEPLGIRP
EDINCPVGTFAIPEFGTKFVRQMLVDTKPKTFSELIRISGLSHGTDVWLNNAQDLVRNNI
ASLSEVICTRDDIMLNLIHYGLPNKTAFKIMEDVRKGKGLKEEYEQIMREKKVPDWYIES
CKKIKYMFPKAHAAAYVMMAFRIAWFKVYYPEAFYATYFTVRADEFDASMMCHGKEKVKN
KIKEYELKGNNMTQKEKNTLTILEVANEMYARGIKFLPIDIYKSDAVKFKIEKDGLRPPL
NALQGLGVSAAHSIAQARNQGEFLSVDDLRIRAKVSKTVIEILQQNGCLDGLPESNQISL
FG
NT seq
4329 nt
NT seq
+upstream
nt +downstream
nt
atgcagagtgtgttggtaaaggaaagaaagctctccgaactttttccggaagtaattaat
aatgaaaatgagagggagctttttgacactgcaagaatacaaaatataaatgtttataaa
aaatccaggaaactggagatttttattgtttctgacacattaatacctgcaaagaccctc
gacagtgttgaacagagctttaaaaaactgttcgaactggagcaggttcatctcagggtt
tccttcaatgtggagctctcgatagaagaggcacttgaaaagtattgggacagcatactt
tatattgtgaagaagaatattgcgttatgcaggggaatattaagcggatgcaagtggaag
atagaggataaaaaattatatatttaccttaagacaaagggaacagagattttaaagtgc
aaaagttgcgatactttgattgaaaatataataaaagaatgttttggattggaaataaag
gttgaatttaaggattttgaaatagatgaggataaaataaacgaatatatcgaatttaag
gaaaatgaggaagccaagattgtaacggatactgttattaagaataatgaaaaaactcaa
aaaactgagaaaagtgaaaaaacgtccggggaatcaaaaagcaatgtatcttcggccggt
ggggaaaagtccgaggttatttttggcaagaactttaatgacagcgtaatgaacatgtct
gaggtgactcaggattctggcagggttgttgtaaagggagaaataataaggacagaagca
agggaattgaaaagcggtaaactgctgtatgtatttgatgtgacagattttaccaattct
cttactgttaagatttttttggacaaggacaagtccggaagtgttatagaaagacttaag
gaaaaggccaacgtaaaaattcgcggtgaagcccaatacgataaattctcaagagaactg
tcgatattggcttcagatattgttgaggttcccgtgcaggtgaggaccgataatgccgcc
gaaaagagagttgagcttcacctccacacccagatgagtgcaatggacggtgttacgtcg
gtcggagaactgataaagcgtgctgcccagtggggtcacaaggcaattgccgttaccgac
cacggggttgtacaggcttatcccgaggcctgtgaggcggccaaaaagaataaaataaag
gttatttacggaatagaggcatatcttcttgatgattccgttcccattgtctatcatgcc
aatggacatcccgttgacggggagtttgtggtatttgatattgaaacgaccggcctttcg
gctgataaagataaaataacggaaattggtgcggtaaagattaaggaaggtaaaattgtt
gataccttcagcacatttgttaatcctgaaattccgataccggagtttgttgtcaagttg
acaggaatcactgacgatatggtgtcagacgctccaaccatagacaaggttttgcctgaa
tttttagagtttgtgggaacttctcctttagttgcccataatgcggtttttgatacagga
tttatcaggcataatgcccggcttataaacaggaatgtggacaatcctgtaattgacact
ttggaactttcaaggcaaatgtttccggagcttaaaaaacacaaactggatgtggttgca
aagcatcttggtgtttcattggaaaaccatcacagggctcttgacgatgcaaaggcctgt
ggggagatctttatcaaatgccttgagatactggctgaaaagaatgtaaaaacaattgat
gacatacaaaatgtttttgagggttgttggaattatcagaaagcaaattcataccatgcc
attatacttgtaaaaaattacgtaggccttagaaatctgtacaagattgtgtccaagacc
catttggagtattttcacaaaaggccgagacttccaagaaagcttttaatgatgcacaga
gaaggactcattttgggaagtgcgtgtgaagcgggagagctttaccgtgcgattcttgaa
aacaaagatgaggacgaaatttcaaggattgtaaagttttacgattatcttgaaatacag
cctttgggcaacaaccgtttccttgtcgagagcggaaaggtgaacagtgaggaagactta
aagaatataaacagaaaaatagtagctttgggtgagaagtacaacaagccggtggtcgct
acctgcgatgttcatttcatggatccgcaggacgaagttttcagaagaatacttatggcg
gggcaaggtttttccgatgcggacaaccaggcaccgttgtatttcaggaccactgatgaa
atgctggaagagtttgaatatctgggcagggaaaaatgctatgaagtggttgtaacaaat
acaaatttaattgcggatatgtgcgaggacatacttcccataccggaaggaacttttcct
cctaaaattgaaggtgcggaagaagaaataaggatgcttgccgaaaacaaggcgagagaa
atttatggcgaccctcttcctgagattgtggaaaagcgcatggaaaaggagcttaactca
ataataaaaaatggcttctccgttatgtatattattgcgcaaaaacttgtatggaaatct
ttaagtgacggctatcttgtagggtcgaggggatccgtcggatcatcctttgttgcctat
ctcataggcataacagaggttaattcccttccgccccattacatatgcgaaaactgcaaa
tactcggagtttattgaagacggaagctacgggtgtggctttgacatgccggaaaaggaa
tgtcccaggtgcgggaaaattttaaaaaaagacggttacgatattccctttgaaactttt
ttgggatttgaaggagataaagagcctgatattgaccttaacttttcaggagaataccag
ccgatagctcataaatataccgaagaactttttggtgtgggacatgtctacagagccggt
acaattggtacaattgcagaaaagacggcctatggatttgtaaaaaactatcttgacgaa
agagggatagttgcgaccaatgcggaaattaaccgtcttgtcaaaggttgtaccggtgta
aagagaactaccggacagcaccccggaggagttatgattgttccccaggacagggaaatt
tatgaattttgtccgatacagtatccggcggacgacccggactcgggtaccattacgacc
cactttgattaccactccatcagtggaagacttttaaagcttgacatactcggacatgat
gaccctacggttataaagatgctggaggatttgacaggggttaatgccaggacgattccc
ataggtgaaaagagaacaatgggtatattcagcagcaccgaacctttgggaataaggccc
gaagacataaactgcccggtaggaacttttgcgattcccgaatttggaaccaagtttgta
aggcagatgcttgtagataccaaaccaaaaactttctccgagcttataaggatttcggga
ctttcccacggaacggatgtctggctcaacaacgcccaggatctggtaagaaataatatt
gcctcattgtcggaagttatatgtaccagagacgatataatgttaaatctcatacactac
ggccttccgaacaaaacagcgtttaaaattatggaagatgtaagaaaaggaaagggactt
aaagaggaatatgagcagataatgagagaaaaaaaagtgccggactggtacattgaatcc
tgtaaaaaaataaaatacatgttcccgaaagcccatgcggcagcatacgttatgatggct
ttcagaattgcgtggtttaaggtttactatcccgaagcattttatgccacatattttacc
gtaagggcggatgaatttgacgcttccatgatgtgtcacgggaaggaaaaggtaaaaaac
aaaataaaggagtatgagttaaaaggaaacaatatgacccagaaagaaaagaacactctt
accatacttgaggttgcaaacgaaatgtatgcaaggggtataaagtttttgcccattgac
atctataaatccgatgccgttaagtttaagattgaaaaagacggactcagaccgcctttg
aatgctcttcaggggcttggagtttctgctgcacacagtatagcccaagcaagaaaccag
ggtgagtttttatctgtggacgacttgagaataagggcgaaggtgagcaagacggttata
gaaattttgcagcaaaacgggtgcctggatggtttacctgaaagtaaccagataagcttg
tttggctga
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