Acetivibrio thermocellus ATCC 27405: Cthe_2179
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Entry
Cthe_2179 CDS
T00474
Name
(GenBank) Pectate lyase/Amb allergen
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
cth
Acetivibrio thermocellus ATCC 27405
Pathway
cth00040
Pentose and glucuronate interconversions
cth01100
Metabolic pathways
cth02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
cth00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
Cthe_2179
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Cthe_2179
Enzymes [BR:
cth01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
Cthe_2179
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Dockerin_1
Beta_helix
Pel9A-like_beta_helix
CBM_6
Chondroitinas_B
CBM_35_2
Motif
Other DBs
NCBI-ProteinID:
ABN53381
UniProt:
A3DHF2
LinkDB
All DBs
Position
complement(2593348..2596116)
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AA seq
922 aa
AA seq
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MQKRVSAKISFLLVLSMFIGMFFVISRNSSVQAAPSFELVGFATLNGGTTGGTGGKEVTA
TSISQINELLSQRKKNKDTSPLVIKFDRKLTGSEVIACKKVSNITFLGVDGKGELEGAGI
NIVKSKNIIVRNLKIHHTRAPMDAIGIENSQNIWIDHCELYNEIGDCNGDGIVDPNDGDT
EGGDVDWYDGLLDIKKSSEYITVSWNYFHDSYKTSLIGSSDGDDYDRKITFHHNICANVK
SRTPSYRGGTGHMFNNYYVDVLGSGINSRVGAKLRIEGNIFERVGCGAVDSKTGFAEGPI
GSYYSSKIGYWDVRDNIFIDCKGNQPTTSTCSFEPPYKYDHVLQPASQVKETVLRYAGVQ
GNIVLPTTSPTNPPAATPTQPKNTQQPTVKYGDLNGDGNVNSTDSILMKRYLMKSVDLNE
EQLKAADVNLDGRVNSTDRSILNRYLLKIIEKLPYGNEIPPATPTPTDTHPSSTPTEGVV
HEAESSSNHLKYAKVESNYVVFDQTKDAYIEMKKVNSPVTGEVTITIVYSNGSGKSLPME
IKVNSTTIESNKEFPSTGAWNIWSTLSVKANMNSGSDNVIRIKTRSNDGGPRIDKVIVSA
GGSGYTPATTPPSTTKPVTTPTPTVPTSTSAIPVEGDIILSPNGSMTLQQAIDLIQPGKT
IYLKAGTYKYSKTILIKEGNDGLPNARKTLAAYGDGEVIIDFSAMTENSSNRGIVLDAKY
WHVKGITIKGAGDNGMLLSGHYNIIEKCTFRENRDSGLQLSRYNTSYNTKDKWPSNNLII
DCLSTMNMDSRREDADGFAAKLTCGEGNVFRNCIAINNCDDGWDLYTKKETGAIGVVTLE
NCQAIGNGYGVNGKDTGGDGNGYKLGDDTASVPHILINCVAKNNKKHGFTGNGNPAKIVL
QNCTGSGNGGKLFDRLDNAIFK
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaaaagagtttcggcaaaaatctcgttcttgttggttttatcaatgtttattggt
atgttttttgtaatatccagaaattcttctgttcaagcggcgccaagctttgaactggtt
ggatttgcaacgttgaacggcggtaccacgggcggtacgggcggtaaagaagtgactgcc
accagtatatcgcagattaacgagctgttaagccaaaggaaaaagaataaagacacatca
cctcttgtaatcaagtttgacagaaaattgaccggttcagaagttattgcctgtaaaaaa
gtaagcaacattacatttctcggtgttgacggcaaaggtgaattggaaggtgccggaatc
aatatagtcaagtcaaaaaatatcattgttcgaaatttgaaaattcaccatacaagagcc
cctatggatgcaatcggtattgagaattcccagaatatttggattgaccactgtgaattg
tataacgagattggcgactgtaacggtgacggaatagttgacccgaatgacggagacacc
gaaggcggagatgttgactggtatgacggacttttggatattaaaaagtccagcgaatat
ataactgtatcgtggaactatttccatgactcctacaaaacaagtcttataggctcatcg
gacggtgatgactatgacagaaaaataactttccatcataatatatgtgcaaacgttaaa
tcccgtacgccaagctacagaggcggtacagggcatatgttcaacaactattatgtggat
gttttaggcagcggtataaactcaagagtgggcgcaaaattaagaatcgaaggaaacatt
tttgaaagggtcggatgtggagcggtagacagcaaaacaggctttgcggaaggaccgatt
ggttcgtattacagcagtaaaatcggatattgggatgtaagagacaatatatttattgat
tgtaaaggaaatcagcctactacttcaacatgcagctttgagccgccatacaagtatgac
catgtattgcagcctgcaagccaggttaaagaaactgtgctgcgttatgccggtgtccag
ggtaatattgtactgccgactacatctccgacaaatccacctgcggctacaccgacgcaa
ccgaaaaatactcagcagccgactgtgaaatatggtgatttgaacggagacggaaatgtc
aactcaacagattcgattttaatgaaaagatatcttatgaaaagtgttgatttaaatgaa
gaacagcttaaggctgcggatgtgaaccttgacggcagagtgaattcgaccgataggagc
atactgaacagatacctgttaaaaataattgagaagctgccttatggtaacgagatacct
ccggcaacgccgacgcccaccgatacgcatccgagttcaactccgaccgaaggtgtggta
cacgaggcggaaagcagcagcaaccatttgaaatacgccaaagtggaatccaactatgtt
gtgtttgaccagacgaaagatgcgtatattgaaatgaaaaaagttaattcacctgtaacc
ggtgaggtgacaattaccattgtatattcaaacggttcggggaaaagcctgccgatggaa
atcaaagtaaacagcactaccattgaaagcaataaagaatttccaagcacaggagcatgg
aatatatggagcactctcagtgtaaaagcaaatatgaacagcggttcggataatgttata
agaatcaaaacacgttcaaatgacggtggaccgcgaattgacaaagtaattgtaagtgcc
ggggggtcaggatacacaccggcaacaacgccgccctcaacaaccaagcctgtaaccaca
ccaacgccaacagtgccaacatcaacatctgcaatccctgtggaaggagacattattctt
tcacccaatggttcaatgacgcttcagcaagccattgacttgattcaaccgggaaagaca
atatatttgaaagcaggaacatacaaatattcaaaaactatactcataaaagaaggaaat
gacggtttgccaaacgcaagaaagacgttggcggcctatggggacggagaagtaattatt
gacttctcagcgatgacggaaaattcctccaacagaggtattgttcttgatgccaaatac
tggcatgtcaaaggaataaccataaaaggagcgggagacaacggaatgctgctctcagga
cactacaatattattgaaaaatgtacgttcagagagaaccgcgactcaggactccagctg
tcaagatacaatacctcctataatacaaaagacaaatggcccagcaataatcttataata
gactgcctgtcaaccatgaacatggattcccgccgtgaggatgccgacggttttgcggca
aaacttacctgcggagaaggtaacgtatttagaaattgtatagccattaacaactgtgat
gacgggtgggacttgtataccaagaaagaaacaggagctataggcgttgtaactttggaa
aactgccaggctataggaaacggttatggtgtgaacggaaaagatacaggcggagacggt
aacgggtacaaacttggagatgacaccgcttcagtaccccatatacttataaattgtgtg
gctaaaaacaataaaaagcatggatttaccggcaacggtaatccggcgaaaattgtattg
caaaactgcaccggttcgggtaacggaggaaaactgtttgacagacttgacaatgcaata
tttaaataa
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