Acetivibrio thermocellus ATCC 27405: Cthe_2724
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Entry
Cthe_2724 CDS
T00474
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
cth
Acetivibrio thermocellus ATCC 27405
Pathway
cth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cthe_2724
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cth03021
]
Cthe_2724
03400 DNA repair and recombination proteins [BR:
cth03400
]
Cthe_2724
Enzymes [BR:
cth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cthe_2724
Transcription machinery [BR:
cth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cthe_2724
DNA repair and recombination proteins [BR:
cth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cthe_2724
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_45
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
DUF5887
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ABN53923
UniProt:
A3DIZ4
Structure
PDB
PDBj
LinkDB
All DBs
Position
3211435..3215187
Genome browser
AA seq
1250 aa
AA seq
DB search
MVHPVKLGRNVRMSYSKIDEVIDMPNLIEIQKNSYEQFLKEGFKEVFKDVNPITDYTGNL
ILEFVDYSLDEPPKYSVDECKERDATYAAPLKVKVRLINKETGEVKEQEIFMGDFPLMTE
TGTFIINGAERVIVSQLVRSPGIYYAMKIDKAGKQLFSNTVIPNRGAWLEYETDSNDVLS
VRIDRTRKLPLTVLVRALGYGTDLEITELFGEDERILATIQKDSTKTEEEGLLEIYKRLR
PGEPPTVESAKALLHGLFFDPKRYDLAKPGRFKFNKKLSIAARIHGFIAGENIKDPDTGE
IIVAEGETISREKAETIQNAGVNTVILRVDGKNVKVIGNDMVDIKRYVDFDPKEIGINEK
VKRDVLMEILEEYKGKGDDAIKKALQERIDDLIPKHITKEDIISSISYIIGLSYGIGSTD
DIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDLDVVTPQALINIRPVAAAIK
EFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIET
PEGPNIGLIGSLSTYARVNEYGFIETPYRKVSKEEPGKVTNEIVYLTADEEDEYIIAQAN
EPLDEEGRFISNKVVCRYKEEFIEVDPSKIDFMDVSPKQIVSVATSMIPFLENDDANRAL
MGANMQRQAVPLIKTESPIVGTGIEYRAARDSGVVILAKNPGVVEKVTANEIIIRTKDGK
RDTYKLLKYMRSNQGTCINQRPIVKKGEEVEAGDVIADGPSTDNGEIALGKNVLVGFMTW
EGYNYEDAILISERLVKDDVFTSIHIEEYEAEARDTKLGPEDITREIPNVSEDALKDLNS
EGIIRIGAEVRAGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGESGI
VVDVKIFTRENGDELAPGVNKLVRVYVAQKRKISVGDKMAGRHGNKGVISRILPVEDMPF
LPDGTPLDIVLNPLGVPSRMNIGQVLEVHLGYAAKALGWKVATPVFDGATEEDIVQTLRK
AGLAEDGKSILYDGRTGEPFENRVTVGYMYMLKLAHLVDDKIHARSTGPYSLVTQQPLGG
KAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGIPE
CFKVLIKELQSLCLDVKVYSEEQEEIAIKESVEDDLEELNVNIEGREDEVNFNEFNDIGE
EITDEDLEVEDFDLQDLNDDDINPDDTIDAELDDNLFDDDFDDTFDDDDL
NT seq
3753 nt
NT seq
+upstream
nt +downstream
nt
atggtacatcccgtgaaattgggaagaaacgttagaatgagttattcaaaaattgatgaa
gttatcgacatgccaaaccttatcgaaattcagaagaattcgtacgagcaattcctcaaa
gagggttttaaggaggttttcaaagacgtcaatcccataactgattacaccggaaatctg
attctggaatttgtagactattcattggatgaaccccccaaatacagtgtggatgaatgt
aaagaaagagacgcgacttatgctgcacccttaaaagtaaaggtgcgtcttatcaacaag
gaaacgggcgaagttaaagaacaggaaatttttatgggtgatttcccactgatgactgaa
acgggaacttttattattaatggagctgagagggttatagtcagtcagcttgtaagatca
cccggaatttactatgcaatgaagattgataaagcaggaaaacagttgttttcaaataca
gttattccaaacagaggagcatggcttgaatatgaaaccgattcaaacgacgttttgtcg
gtgcgtatagacagaaccaggaagctgcctctgacggtattggtaagagcactgggatat
ggaacggatcttgagattaccgagctttttggcgaggatgaaagaatacttgcgacaata
cagaaagacagtaccaagacagaagaggaaggacttcttgagatatacaaaaggctcaga
ccgggagagccgccgacggttgaaagtgcaaaagcacttctccacggactgtttttcgac
cctaaaaggtatgatttggcaaagccgggaagatttaaatttaacaaaaagctttccatt
gcagcaagaatacacggctttatagcaggtgaaaatattaaagaccctgataccggtgaa
ataattgttgctgaaggagaaaccatttcaagggaaaaggccgaaacgatacaaaatgcc
ggtgtcaatacggtaattctcagagttgacggcaaaaatgtcaaagtcatcggcaatgac
atggtggatatcaaaagatatgtggattttgacccgaaggaaatcggcatcaatgaaaaa
gtcaaaagagatgttttaatggagattcttgaagagtacaagggaaagggcgacgatgcg
atcaaaaaggctttacaggaaagaattgacgatctgattccaaagcatatcacgaaagaa
gatataatatcgtccatcagctatataataggattgagctacggaatcggaagcacggat
gacattgaccatttgggtaacagaagactccgttctgtaggagagcttctgcaaaatcag
ttcaggattggtctttccagaatggaaagagtggtaagggaaagaatgacaatccaggac
ctggatgttgtcactccacaggcgcttattaatataaggccggtggcggcggcaataaaa
gagttctttggaagcagccagctgtcccagttcatggaccagaccaatcctttggcggag
cttacgcataaaagaaggctcagtgcgctgggccccggaggtttgagcagggaaagagcg
ggatttgaagttcgtgacgttcaccattcccactatgggcgtatgtgccctatagagaca
ccggaaggaccgaacattggtcttatcggttcgctcagtacctatgcaagagtaaatgaa
tacggttttattgaaacgccgtacagaaaagtaagcaaggaagaaccgggtaaagttacc
aacgagatagtttacctgactgcggatgaggaagacgaatatattattgcgcaggcaaat
gagccgctggatgaagaaggaaggtttatttccaataaagttgtatgtagatacaaggaa
gagtttattgaggttgatccgtccaaaattgactttatggatgtatcaccaaagcagata
gtttctgttgcgacatcaatgataccgttccttgaaaatgatgacgcgaaccgtgcactg
atgggagcaaacatgcaacgtcaggcggttccgcttataaaaactgagtcgccgattgtc
ggaacgggaattgagtacagggctgcaagggattcaggagttgttatactggcgaaaaat
ccgggagttgttgaaaaggtaaccgccaatgagattattattcgtacaaaagacggtaaa
agagatacttacaagctcctcaaatacatgcgctccaaccagggaacatgtatcaaccaa
agaccgatagtgaaaaaaggtgaagaggttgaagcgggagatgtaatagcggacggtcct
tccacagataacggtgaaattgcattaggaaagaatgttctggtaggatttatgacctgg
gaaggatacaactacgaggacgccatcctgataagtgaaagactggttaaagatgatgtg
tttacatccatccatatagaagagtatgaggctgaggcaagggacacgaagctcggtccc
gaagatataaccagagaaatacccaatgtcagcgaagatgcattgaaagacctgaacagc
gaaggtattatcagaataggagccgaagtcagagccggtgatatcctcgtaggaaaggtt
acgccaaaaggagagacggagcttaccgctgaagaaagacttcttcgtgcaattttcgga
gaaaaagcaagggaagtcagggacacctctttgcgtgtgcctcacggggaatcgggtatt
gttgttgacgtaaaaatatttacaagagaaaacggtgatgaactggcacctggagtaaac
aagctggtaagggtttatgttgcacagaagagaaaaatatctgttggagacaaaatggca
ggaagacacggaaacaagggtgttatatcgaggattctgccggtggaagatatgcctttc
cttcctgacggtactccattggatatagttttaaatccgctgggcgttccgtcccgtatg
aatatcggacaggtacttgaggtacatcttggttatgcggctaaagcccttggctggaaa
gttgcaactccggtttttgacggtgctaccgaggaagatatagttcagacgctgagaaaa
gcaggtcttgctgaagacggcaagtcaatattgtatgacggaagaacgggagaaccgttt
gaaaacagggtgactgtaggttatatgtatatgctcaagcttgcccaccttgtagatgac
aagatacatgcccgttcaaccggtccatattctctggtaacgcagcagcctttgggaggt
aaggcacaattcggcggacagagattcggagagatggaagtttgggctttggaagcttac
ggtgctgcctatacactgcaggagatactgacggtcaagtcggacgatgtagtgggcagg
gttaagacttacgaggcaatagtaaagggcgaaaacgttccggagccgggtatccccgaa
tgcttcaaggttcttatcaaggaacttcaaagtttgtgccttgatgtgaaagtatactcg
gaggaacaggaagaaatagctattaaagaatcggttgaagatgatcttgaagaacttaac
gtcaacattgagggcagggaagatgaagttaacttcaatgagtttaacgacatcggagag
gaaataacggatgaagaccttgaagtggaagacttcgacctgcaggatttaaacgacgat
gatatcaatcctgatgacactattgatgccgaactggatgacaatctttttgacgatgat
tttgatgatacttttgatgacgatgatttataa
DBGET
integrated database retrieval system
