Acetivibrio thermocellus ATCC 27405: Cthe_2725
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Entry
Cthe_2725 CDS
T00474
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cth
Acetivibrio thermocellus ATCC 27405
Pathway
cth03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cth00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Cthe_2725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cth03021
]
Cthe_2725
03400 DNA repair and recombination proteins [BR:
cth03400
]
Cthe_2725
Enzymes [BR:
cth01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Cthe_2725
Transcription machinery [BR:
cth03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Cthe_2725
DNA repair and recombination proteins [BR:
cth03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Cthe_2725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
PIN_12
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
ABN53924
UniProt:
A3DIZ5
Structure
PDB
PDBj
LinkDB
All DBs
Position
3215205..3218702
Genome browser
AA seq
1165 aa
AA seq
DB search
MFELNNFDSIRIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPQKDWEC
HCGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLLLDM
SPRALEKILYFAAYVVIDPGQTPLSKKQILSEKEYRDSLEKFGPKFRAGMGAEAVRELLQ
EINLDELSAELREEIKQSTGQKRVRAIKRLEVVEAFRQSQNKPEWMILDVIPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPKE
MALELFKPFVMKKLVNDGLAHNIKSAKRMVERVRNEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRALKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPQDGKPVAVPTQDMVLGSYYLTILKEGAKGEGRVFTSMDEAVMAYDNGEIELHSKIKVR
MKRVVDGVEKSKIIETTLGRLIFNEAIPQDLGFVDRSDPDKIFDLEVDFLVGKNELKKII
DKSIKVHGTTKTAILLDKIKELGFKYSTKGAITISISDMVIPEVKAKYIKETEEKIEKIT
KQYKRGLISDEERYNSVIAAWTEASENITRALINNLDRFNPVYMMSQSGARGNINQIKQL
AGMRGLMADTSGKTIEFPIKANFREGLTVMEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVRETDCGTRKGIEVTDIKDGNEVIEELSERIIGRYPVGNIVHPETGEIIVEA
GRMITDQDAEKIVKAGIKKVRIRSVLTCHSEYGVCAKCYGANLATGEECNVGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELFEARKPKGLAIISEIKGTVKISETK
KKREIVVTSEDGETRSYLIPYGSRIKVSDGDQVEAGDELTEGSVNPHDILKIKGVEAVQT
YLVHEVQKVYRMQGVDINDKHIEVIVRQMLRKVKVEDPGDTSLLPGGLVDVFDFEEENAK
AIAEGKKPAVAKRALLGITKAALATDSFLSAASFQETTRVLTEAAIKGKVDPLVGLKENV
IIGKLIPAGTGMSRYKDITISTVTE
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
gtgtttgaacttaataacttcgattcaataagaataggtttagcttctccggaaaagatc
agagaatggtccaggggtgaagtaaaaaaacccgagaccataaactacagaacgttaaag
cctgaaagagacggacttttctgtgaaagaatattcggaccccaaaaggactgggagtgc
cattgcggaaagtataagagaatcagatataaaggcatagtgtgtgaccgttgtggagtt
gaagttacaaggtcaaaagtaagaagggaaagaatggggcatattgagctggcagcccct
gtgtcccacatatggtactttaaaggaatacccagcagaatgggactgcttttggacatg
tctccaagagctctggaaaaaatattgtattttgcggcctatgtcgttatcgacccggga
cagacccctctttccaaaaaacaaatattgtcggaaaaagaatacagggacagtctggaa
aagtttgggccgaagttccgtgccggaatgggtgcggaagcggtaagggagcttcttcag
gaaatcaatcttgacgagctttccgctgagcttagggaagaaatcaaacagtccacggga
caaaagagagtaagggcaattaaaaggcttgaagtggttgaggctttcagacagtcacaa
aacaagcctgaatggatgatattggatgtaattccggttattccgccggaactcagaccg
atggttcagcttgacggtggaaggtttgcgacttcagacttaaacgacttgtacagaaga
gttataaacagaaacaacagattaaaaagacttttggaccttggagcaccggacataatc
gtacgtaatgaaaagagaatgctccaggaggcagttgatgcattaatagacaacggaaga
agaggaagaccggtaaccggtcccggaaacagaccgttaaaatccctttccgacatgttg
aaaggtaaacagggtagattccgtcagaaccttttgggaaaacgtgttgactattccggt
cgttcggttatagttgtggggccggaacttaagatataccagtgcggacttccgaaagaa
atggctttggagcttttcaaaccctttgtaatgaaaaagcttgttaacgacggccttgct
cataatataaagagtgcaaaaagaatggttgaaagagtaagaaatgaggtatgggatgta
cttgaggaagttatcaaggagcatccggtactattgaaccgtgcaccgaccttgcacaga
ttgggaattcaggcgtttgaacccgtgcttgtggaaggtagggcgttaaagcttcatccg
ttggtatgtacggcatacaatgccgactttgacggagaccagatggccgttcacgttccc
ctttccgctgaagcacaggcggaagcaagatttttaatgctttcagccaacaacctgctg
aaaccacaggatggaaaaccggttgcggttcccacccaggatatggttttgggtagttac
tatcttacgattttaaaagaaggtgcaaagggtgaaggaagagtattcacctcaatggac
gaagccgtaatggcctatgacaatggagaaatagagcttcattcaaagataaaagtaaga
atgaagagggttgtagatggtgttgaaaagtcaaaaataatagaaaccactttgggaagg
cttatattcaatgaagccattcctcaggatttgggctttgtggacagaagtgatcctgac
aaaatctttgaccttgaagtcgatttccttgtcggaaaaaatgagcttaagaaaataatt
gacaaaagcataaaggtgcatggaaccactaagacagcaatattgctcgacaaaataaag
gaattgggctttaagtattccacaaagggagctataaccataagtatatcagatatggtt
ataccggaagtaaaagccaagtatataaaagaaactgaggaaaagattgagaaaattaca
aaacagtacaagagaggacttatatccgacgaagaaagatataattcagttatagctgca
tggacggaagcttcggaaaatatcacccgtgcgcttataaacaatctcgacaggttcaat
ccggtgtatatgatgtcccagtccggagcgagaggtaacatcaatcagataaaacagctg
gccggtatgaggggtcttatggctgacacatccggtaagaccatagagttcccgattaag
gctaatttccgtgaaggccttaccgttatggagttctttatatccactcacggtgcaaga
aagggtcttgcagacacggcactaagaactgccgactcgggttatttgacaagacgtctt
gttgacgtaagtcaggatgttattgtaagagaaactgactgcggaacaagaaaaggaata
gaagtaacggatataaaagacggaaatgaagtaattgaagaactgtcagaaagaattatc
ggaagatatcctgtcggaaacatagtgcatcctgaaacaggagaaataattgttgaagca
ggaagaatgataactgaccaggatgcggaaaaaattgtgaaggccggaattaaaaaagta
agaataagatccgtattaacctgccattctgaatatggagtttgtgcaaagtgttatgga
gccaaccttgcaaccggagaagaatgcaatgtcggtgaggctgtaggtataatagcggct
cagtccataggtgaaccgggaacacagcttaccatgagaacattccatactggtggagtt
gccggcgaggacataacccagggtcttccccgtgtggaagaattgtttgaggcgagaaaa
ccaaagggactggcaataatttcagaaataaagggtactgtcaagatatctgaaaccaag
aaaaagagagaaatagttgtaacctcggaagacggtgagaccagaagctacctgattccg
tacggttccagaataaaagtttccgacggagaccaggttgaagccggtgacgaacttaca
gaaggttcggtaaatccacatgacatattgaagataaaaggtgtggaagccgtacagaca
tatttggttcatgaagttcaaaaagtttaccggatgcagggtgttgatatcaacgacaag
catattgaagttattgtaagacagatgctcagaaaagtaaaagtcgaagacccgggagat
acgtcgcttttgccgggagggcttgtggatgtgtttgactttgaagaggagaatgccaag
gctatagccgaaggaaagaaacctgcagtagcaaaaagagctcttcttggtatcacaaag
gcggcattggctaccgactcattcctgtcggctgcatccttccaggaaactacaagagtg
cttactgaagcggcaataaaaggaaaagtcgacccgttggtaggacttaaagaaaatgta
attatcggaaaattgatacctgcgggaacaggaatgagcagatacaaggatattaccata
agtacggtaacagaatag
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integrated database retrieval system
