Acetivibrio thermocellus ATCC 27405: Cthe_3190
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Entry
Cthe_3190 CDS
T00474
Name
(GenBank) helicase, RecD/TraA family
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
cth
Acetivibrio thermocellus ATCC 27405
Pathway
cth03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cth00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
Cthe_3190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cth03400
]
Cthe_3190
Enzymes [BR:
cth01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
Cthe_3190
DNA repair and recombination proteins [BR:
cth03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Cthe_3190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
HHH_RecD2
AAA_30
OB_YrrC
SH3_13
UvrD_C_2
HHH_5
AAA_11
Viral_helicase1
Helicase_RecD
DEAD
SLFN-g3_helicase
AAA_22
AAA
PIF1
NPHP3_N
CbiA
HHH
AAA_24
nSTAND3
AAA_28
ResIII
HHH_2
TrwB_AAD_bind
AAA_12
TraI_hel_assoc_N
SRP54
HHH_3
NTPase_1
UvrD_C
KOW6_SPT5
Motif
Other DBs
NCBI-ProteinID:
ABN54385
UniProt:
A3DKA6
LinkDB
All DBs
Position
3771324..3773456
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AA seq
710 aa
AA seq
DB search
MSGVVERITFVNEENGFSVVKIKSKGFSDLVTAVGNMASVNVGAVVSLRGEWKYDSKFGR
QFNVYHYEESIPATVAGIEKYLGSGLIKGIGPVNAKRIVKVFKEDTIRVIEEEPDRLIEV
PGIGKKRVEMIKEAWQNQKEIKNVMLFLQSHGVSTAFAVKIFKTYGSDSIKIVKENPYRL
ADDIWGIGFKTADKIAQNMGYDKESYARIRSGIMYALNEFANDGHCFAKKDELVNKASEL
LGVELEKVETAIQHMLEEKSVIMEEDDAVYLPPFYYSEVGVARRIREIIETKSMYSFYNF
DGIIEDLQRECNIQYDEVQIEAIRKAVVSKFMVLTGGPGTGKTTTTLAIIKVFQKLGATV
LLAAPTGRAAKRMSEATGMEAKTIHRLLEYSPQDGYKKNDDNPLECDVLIIDETSMIDII
LMYNLLKAVSNNTVVILVGDVDQLASVGAGNVLKDIIESGMVTVVRLMRIFRQAMGSAIV
TNAHKINHGEYPVLKGGKNSNFFFIEEEDPEKIVELVRELCSKRLPGYYKINPLNDIQVL
CPMQKGVVGAQNLNTVLQETLNPCDISIKYGGTIYKLNDRVMQIKNNYDKNVFNGDMGII
TDIDQEEKTVRIKFDDAEVEYDVTELDEVTLAYAVTVHKSQGSEYNFVVAPFTMQHYMML
QRNLLYTCVTRAKKVLVLIGSKKALGCCIRNSRSMDRNTKLAQRLKADTN
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
ttgagcggagtcgtagaaaggataacatttgttaatgaagagaatggcttttctgtcgta
aaaataaagtcgaaaggtttttcagacctggtgacggcagtggggaatatggcttcggta
aatgtcggagccgtcgtaagccttcgaggggagtggaaatacgactctaagtttggcagg
cagttcaatgtataccattacgaagaatcaatacctgccactgttgccggtattgaaaag
tatttgggaagcggacttattaagggaatagggcctgttaatgccaaaaggattgtaaaa
gtgtttaaagaagacaccataagggtaattgaggaggaacccgacaggctcattgaagtt
cccggcatagggaaaaaacgggtggaaatgataaaagaggcgtggcagaatcaaaaggaa
ataaagaatgtcatgctttttttgcagtcccacggtgtttctacggcgtttgccgtgaaa
atatttaaaacatacggaagtgacagcataaaaattgtaaaggaaaacccatacagactt
gcggatgacatatggggaatcggttttaaaaccgcggacaaaatagcccaaaatatggga
tatgacaaggagtcttatgcacgcatcaggtccggcataatgtatgcattaaacgaattt
gccaatgacggacattgctttgccaaaaaagacgaacttgtaaataaggcttcggagctg
cttggggttgagttggagaaagtggagactgccatacagcatatgctggaagagaaatcc
gtaataatggaagaagatgatgcggtttacctcccgcctttttattacagtgaagtggga
gttgccagaagaatacgggagataattgagactaaaagcatgtacagcttttacaatttt
gatgggataatagaggacctccaaagagaatgcaatattcaatatgacgaagtgcagatt
gaagccatcagaaaagcggttgtgtcaaaattcatggttcttaccggcggtccgggcacc
ggtaagactacaaccactcttgcgataataaaggtatttcaaaaactgggtgccacagtc
ctccttgccgcaccaaccggaagagcggcaaagcgtatgtctgaagctaccggtatggag
gcaaagaccatacaccgtttgctggaatacagtcctcaggacggatataaaaaaaatgac
gacaatcctttggagtgtgatgtgctaatcattgatgagacttcaatgattgacattatc
ttgatgtacaatcttcttaaagccgtttcaaacaatacggtggtgatactggttggggac
gtggaccagcttgcttcggtgggagcaggaaatgtactgaaagacattatagaatcgggt
atggtaactgtggtaaggcttatgaggatattccggcaggccatgggaagcgcgatagta
accaatgcgcataaaataaaccatggtgagtatccggtcttaaaaggcggcaaaaacagt
aactttttcttcattgaagaagaggacccggaaaagattgtagaacttgtccgggagctt
tgttcaaaacggcttcccggctactacaaaataaatcctctaaatgacattcaggttttg
tgtcccatgcaaaagggagtggtgggagcgcaaaatctcaatacagtgcttcaggagact
ctaaatccctgcgatatttccataaaatacggcggcacaatttacaaattaaatgacagg
gtaatgcagattaagaacaattatgataaaaacgtatttaacggagacatggggataata
acggacattgaccaggaagagaaaaccgtgcgcataaagtttgatgatgccgaggttgag
tatgatgtgacggagctggacgaggttactctggcatatgcagtcacggtccataaaagc
caggggagtgagtacaactttgtggtggcaccctttacaatgcagcattacatgatgctt
caaagaaaccttttatacacatgcgttacaagagccaaaaaagtcctcgtgctgataggt
tcaaaaaaggcgctggggtgttgcataagaaattccagaagtatggacagaaataccaaa
cttgcccaaagacttaaagcagatacgaattaa
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