Clostridium thermosuccinogenes: CDO33_05320
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Entry
CDO33_05320 CDS
T05300
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cthd
Clostridium thermosuccinogenes
Pathway
cthd03410
Base excision repair
cthd03430
Mismatch repair
cthd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cthd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CDO33_05320 (recJ)
03430 Mismatch repair
CDO33_05320 (recJ)
03440 Homologous recombination
CDO33_05320 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthd03400
]
CDO33_05320 (recJ)
DNA repair and recombination proteins [BR:
cthd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
CDO33_05320 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
CDO33_05320 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CDO33_05320 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
PRESAN
Motif
Other DBs
NCBI-ProteinID:
AUS95910
UniProt:
A0A2K2FGJ3
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All DBs
Position
1226178..1228664
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AA seq
828 aa
AA seq
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MLHNKLWLYKEIPQEDIDRVSSNAGISRFLAKIFISRGMEDKESIKKFLNPSLDMLYDPF
LLKDMQKAVDRIILAIERKEKIVIYGDYDVDGITSTSVLYNFLKSRNADVDYYIPDRIDE
GYGLTAGTVEKVCAMNASLVITVDCGITAIDEVNYINNRKIDVIVTDHHECKEILPDAHA
VISPCRPDSQYPFSYLAGVGVVFKLVHAICIAMGLGTEYLNYLDLVALGTVADVVPLVDE
NRVIVSCGLDKVRNTANIGLKKLVENCNPNSKPITSWMIGYVMAPRINAAGRMGDARRAV
RLFTTEDETEASDIVLQLNDENRLRQDMEAEILNEAISIIDADESYMKEKVLVVAGEGWH
HGVIGIVASRITEKYHRPCLLFSKEGDIAKGSGRSIDSFDLFEALTHCQDLIDRFGGHEQ
AAGLTVPADNLPAFRKKINEYADSILNDEDLMPQIEIDVRIDKDDLNRDNIIELDALAPF
GAGNPAPVFVYRDLKIGNIRTVGDNRHLKLKLQDEEHLFDAIGFNMGDKADVLRTGDMVD
AACTLEINTWNSIDTIQMNLRDLRFGSETAIKEQYYLNLDRCMEMRESAEAGIFNESCDS
ILQRVKPISRKEFIDLAGSQQNMVIIANTLETVLYIESLLKKISVDIKKVLEICYTIFYN
IDVSKIYALINPEPDTLDFSKIDNVVFCGRWVKDSYMKSIIGRIDKSGIYFLDDELIDNI
YSDELIPDRRDMVAVYQYVKANCRNNKLVDSLLMLSRRISNSYKINMNSFKLKRSLEIFD
ELKLMEYREIGGERISLLVADNGKKKTNLENSKSYRYLQQLKAKLKEA
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgctgcataataagctatggctttacaaggagattcctcaggaggatatcgacagagtc
tccagtaatgccggaatatctcgctttttggccaaaatatttataagcaggggcatggaa
gataaggaaagcataaagaaattccttaacccttccttggacatgctgtatgatcctttc
ctcctgaaagacatgcagaaagctgtcgacaggattattctggcaatagagcggaaagaa
aaaattgtaatttatggcgactatgatgtggatgggataacgagcacatcggtattgtac
aattttctgaaatccaggaatgccgatgtggattattatataccggaccggatagatgaa
ggttatgggcttacggcaggtactgtagaaaaggtatgcgctatgaatgcatcccttgta
ataacggtagattgtggtataaccgctatagatgaggtcaactatattaacaacaggaag
atagacgtgatagtgaccgatcatcatgaatgcaaggagattctaccggacgctcatgcc
gtgataagcccatgcaggcctgacagccagtatcctttcagttatctggccggagtaggc
gtggtgtttaagcttgtccacgccatctgcatagcgatgggactggggaccgaatacttg
aattatcttgatctggttgccctgggaactgtggccgacgtggtgccactggtggatgaa
aacagggtgatagtgagttgtggactggacaaggtacggaatactgccaacataggctta
aaaaagctggtggagaactgcaatcccaacagcaagcccattacatcctggatgataggc
tatgtaatggctcccaggataaatgccgcagggcgcatgggtgatgccagaagagcggta
aggctttttaccactgaggatgaaacagaagcttccgacattgttctgcagctgaatgat
gaaaacaggttgaggcaggatatggaggcggagatactcaatgaagcaatttccataata
gatgccgatgaaagctatatgaaggaaaaagtgttggtagtggccggcgaaggatggcat
catggagtgattggaattgtcgcttcaagaataacggaaaaataccaccggccttgctta
ttgttttcaaaggaaggggatattgctaaagggtccggaaggagcatcgacagctttgat
ctctttgaagcattgacccactgccaggaccttattgacaggttcggcggacatgagcag
gctgccgggctgactgtaccggcggataacttgccggctttcaggaagaagattaatgaa
tatgccgattcgattctaaatgatgaggatttgatgccccaaattgagatagatgtgcgc
atagacaaagatgacctaaacagggataatatcattgagttggatgctttagcgcctttt
ggcgccggcaacccggctcctgtttttgtataccgagaccttaaaatcggcaacatcagg
actgtaggggataacaggcatttgaagctgaagctgcaggatgaggaacatctttttgac
gcgataggattcaacatgggtgacaaagctgatgtgttaagaacaggagatatggtagac
gccgcatgcaccctggagataaatacttggaactccattgataccatacagatgaacttg
agggatttgcgcttcggcagtgaaacagccataaaggagcaatattatcttaacctcgat
cggtgcatggaaatgagggagtcggcagaggccggtatttttaatgagtcctgcgacagc
atcctgcaaagggtgaagcccatcagcaggaaggagtttatagatctggccggatctcag
caaaacatggtcatcattgccaatacattggagactgtattatatatagagagtttatta
aaaaaaatttcggtagatattaaaaaagtgttagaaatttgttatactattttttataac
attgatgttagcaaaatttatgcattgatcaatccggagccggatacgctggactttagc
aaaatagacaatgtggttttttgcggaagatgggtaaaggacagctatatgaaaagcatc
ataggcaggattgataagagcggaatatattttcttgatgatgaattaatagataatata
tacagcgatgagctgataccggacagaagggatatggtggccgtataccagtatgtcaag
gcaaactgcagaaacaacaagctggtggatagccttttaatgctgtcacggcgcatatca
aacagttataaaataaatatgaacagctttaaactgaagagaagccttgaaatatttgat
gagttaaagctgatggaataccgggagattggcggggaaagaatttcattgctggtggcc
gacaatggaaaaaagaaaaccaaccttgaaaactcaaagtcatacaggtatttacaacag
ttgaaagcaaaacttaaggaagcttga
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