Clostridium thermosuccinogenes: CDO33_15555
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Entry
CDO33_15555 CDS
T05300
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cthd
Clostridium thermosuccinogenes
Pathway
cthd03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cthd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDO33_15555 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthd03021
]
CDO33_15555 (rpoC)
03400 DNA repair and recombination proteins [BR:
cthd03400
]
CDO33_15555 (rpoC)
Enzymes [BR:
cthd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDO33_15555 (rpoC)
Transcription machinery [BR:
cthd03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CDO33_15555 (rpoC)
DNA repair and recombination proteins [BR:
cthd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CDO33_15555 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
PIN_12
Motif
Other DBs
NCBI-ProteinID:
AUS97729
UniProt:
A0A2K2F5A6
LinkDB
All DBs
Position
complement(3542627..3546136)
Genome browser
AA seq
1169 aa
AA seq
DB search
MFELNNFESIRIGLASPEKIREWSKGEVKKPETINYRTLKPERDGLFCERIFGPQKDWEC
HCGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLILDM
SPRALEKILYFASYVVIDPGQTPLSKKQVLSEKEYRDSVEKFGHNFRAGMGAEAIKELLM
EIDPEKLSKELKAELADATGQKRVRLIKRLEVVEAFRTSGNRPEWMILDAVPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSEMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKIYQCGLPRE
MALELFKPFVMKKLVNDGLAHNIKSAKRMVEKVRNEVWDVLEAVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARFLMLSANNLL
KPQDGKPVTVPTQDMVLGCYYLTIDREGEKGEGKVFSSYDEAMLAYTNGVIGLHARIGVR
VRKEIDGKPMSRIVTSTIGRFIFNSAIPQDLGYVDRTDPEKAFDLEVDFLVGKKELGKII
DRCIKKHGTTETAIVLDNIKALGFKFSTKGAITISVSDMVIPEVKARYLKETEEKIENIT
KQYKRGLISEEERYNSVIAAWNEASDNIQSALIENLDKMNPLYMMSNSGARGNINQIKQL
AGMRGLMADTTGRTIELPIKSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREVDCGTKKGIEVYAIKDGNEVIEGLAERLVGRYTIDDVVHPETGEVLVPA
DTMINDAQAEKIEKAGIKKVLIRSVLTCHSELGVCSKCYGANLATGRECNVGEAVGIIAA
QSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELFEARKPKGLAVISEIDGTVKLSETK
KKREIIVTSEDGDSRTYLIPYGSRLKVSDGDVVEAGDELTEGSVNPHDILKIKGVKGVQA
YLLQEVQRVYRLQGVDINDKHIEVIVRQMMRKVKVEDPGDTNLLPGGLVDMFEFEKENNR
VAELGLRTATGRRALLGITKASLATDSFLSAASFQETTRVLTEAAIKGKTDPLIGLKENV
IIGKLIPAGTGMSRYKDISIQIVEDKAEK
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaattgaacaactttgaatccattagaattggtttggcttctcctgagaagatc
agggaatggtccaaaggtgaagtaaaaaaaccggaaactattaattatagaactctgaaa
cccgaaagggatggtctcttctgtgagagaatttttggaccgcagaaggactgggaatgc
cattgcggaaaatataaaagaataaggtataaaggtattgtttgtgaccggtgcggagtt
gaagtaacccgttccaaggtaagaagggaaagaatggggcacatagaattggctgccccg
gtatcccatatatggtattttaaaggaatacccagcaggatgggattgatcctggacatg
tcgcccagggctcttgaaaaaattctgtactttgcttcttatgtcgtaatagatcccgga
cagacccctctgtccaagaagcaggtgctttctgaaaaagaatatcgggacagtgttgaa
aaattcggacataacttccgtgccggaatgggtgcagaagctatcaaagagctgcttatg
gaaattgatccggagaagctttcaaaagaattgaaggctgaactggctgacgccaccggg
caaaaaagagtaagactcataaaaaggcttgaagtggtagaggctttcaggacatcagga
aacaggcccgagtggatgatactggatgccgtgcccgtaatacctccggaactgagacct
atggttcagctggacggtggcagattcgcaacatcagatttgaacgacctttacagaaga
gtaattaacagaaacaatcgtctgaaaaggcttctggaccttggagctcctgacataatc
gtcaggaacgaaaagaggatgctgcaggaagctgtagatgctctcattgataacggaaga
aggggaagacctgtaaccggacccggcaacaggcctcttaaatccctttctgaaatgctg
aaaggaaagcagggtcgctttcgtcagaacttgctgggtaaacgtgttgactattccggg
cgttcagttattgttgtaggaccggagcttaagatataccagtgtggtttgccaagagaa
atggctctggagcttttcaaaccttttgtaatgaaaaagcttgttaatgacggattggcc
cataatataaagagcgcaaagagaatggtggaaaaggtaagaaatgaagtctgggatgtg
ctggaagcggttataaaggaacatccggttctgctgaaccgtgctccaacgctgcacagg
ctgggtattcaggcttttgaacccgtattggtggaaggtagagcaataaagcttcatccg
ctggtatgtactgcttacaacgccgactttgacggtgaccagatggctgtgcacgtacca
ttgtctgcagaggcacaggcagaagccagattcctcatgctttcggcaaacaacctgttg
aagcctcaggatggaaaacctgttacagttcctacacaggatatggttttgggctgctat
tacctgaccatagaccgcgaaggagaaaagggagaaggaaaggtcttttcatcctatgat
gaagctatgctggcatacaccaacggcgtaatcggtttgcatgccaggataggcgtgagg
gtcagaaaagaaatagatggcaagcctatgtcccgcattgtcacctcaactattggaaga
tttatattcaatagtgccatccctcaggatttgggctatgtggacagaactgacccggaa
aaagcttttgatcttgaggtggatttccttgttggtaagaaggaactgggtaagatcatt
gacaggtgcataaagaagcatggaactaccgaaacagctattgtactggataatataaaa
gctttgggcttcaagttctctaccaagggagccatcaccataagcgtatccgatatggtt
atacctgaagtaaaagcccgctatctgaaagagacggaggaaaagattgagaatatcaca
aagcagtacaagagaggtcttatctccgaagaagagcgttacaactctgtcatagcagca
tggaacgaagcatcggataatattcagagcgctcttattgaaaacctcgataagatgaat
cctctttacatgatgtccaactcaggtgcgagaggtaacataaaccagattaaacagctg
gcaggtatgaggggcttgatggcggataccaccggtaggacaatagagctgcctatcaaa
tcaaacttccgtgaaggtctgaacgtgctggagttcttcatctcgacccacggtgccaga
aaaggtctggcggataccgcattgagaaccgcggactccggatacctgacaaggcgtctg
gttgatgtcagccaggatgttatagtaagagaagtggactgtggaactaagaagggtatt
gaagtatacgcaataaaagatggcaatgaggttattgaaggattggcagaaaggctggta
ggaaggtataccatagatgatgttgttcatcctgaaaccggagaggtattggttcctgcc
gatacaatgatcaatgatgcccaggcagaaaaaatagagaaggccggaataaagaaggta
cttataagatctgtgctcacatgccattcagaattgggtgtatgctccaagtgctatgga
gcaaacctcgcaacaggcagagagtgcaatgtcggagaggcggtaggtataatagctgct
cagtccataggtgagccgggtactcagcttacgatgagaactttccatacgggcggtgtt
gcaggagaagatatcacccagggtctcccccgtgtagaagaattgtttgaggcaagaaaa
ccgaaaggactggctgttatctccgagatagacggtacggtcaagctgtccgaaacaaag
aagaagagggagataatcgtaacatccgaggacggcgattcgaggacttaccttatccct
tatggttcgagactgaaggtttccgacggtgacgtcgtagaggcaggagatgaattgaca
gaaggttccgtaaatcctcacgacatattgaagatcaagggagtaaaaggcgttcaggct
tatctcctgcaggaagttcagagagtttacagactgcagggtgttgatataaatgacaag
catattgaagttatagtcagacagatgatgagaaaggtaaaggtggaggatcccggagat
acaaatctgttaccgggcggactggtggatatgttcgagtttgaaaaggagaacaaccgg
gtggcagaactgggtctcagaactgctaccggcaggagggccctgttaggtataacaaaa
gcttcgctggctaccgattccttcctctccgcagcatccttccaggaaaccacaagggta
ttgacggaggcagccataaagggcaagacggatcctctgataggtctgaaggaaaacgtt
ataatcggaaagctcatacctgccggaacaggaatgagcagatacaaggacataagtatt
caaattgtggaagacaaagcagaaaagtag
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