Chroococcidiopsis thermalis: Chro_0449
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Entry
Chro_0449 CDS
T02360
Name
(GenBank) DNA-directed RNA polymerase gamma chain
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cthe
Chroococcidiopsis thermalis
Pathway
cthe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cthe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Chro_0449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthe03021
]
Chro_0449
03400 DNA repair and recombination proteins [BR:
cthe03400
]
Chro_0449
Enzymes [BR:
cthe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Chro_0449
Transcription machinery [BR:
cthe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Chro_0449
DNA repair and recombination proteins [BR:
cthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Chro_0449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
Cas9-BH
DUF2164
Motif
Other DBs
NCBI-ProteinID:
AFY85998
UniProt:
K9TUB9
LinkDB
All DBs
Position
500618..502648
Genome browser
AA seq
676 aa
AA seq
DB search
MSGVPTPYSLLPTTRLRWRTRLQCGGSLRFRPLGNLAICPLPYSLLPYPSNMRPGLSNQF
DYVKIAIASPDRIRVWGERTLPNGQLVGEVTKPETINYRTLKPEMDGLFCERIFGPAKDW
ECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKGIPSYISILL
DMPLRDVEQIVYFNAYVVLKPGNAETLTYKQLLSEDQWIEIEDQLYSEDSTLEGIEVGIG
AEALANLLSDIKLEPEAETLRQEIGTAKGQKRAKLIKRLRVIDNFIATGSKPEWMVMSYI
PVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRMLQEA
VDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLK
IHQCGLPREMAIELFQPFVIHRLIRGGIVNNIKAAKKLIQRNDPSVWDVLEEVIEGHPVL
LNRAPTLHRLGIQSFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSLESQSEARL
LMLASNNILSPATGRPIITPSQDMVLGCYYLTAENPNNNRGAGSYFASLDDAIVAYEQER
VDLHAKVWVRYDGKVETAKPDSEPLKVEKQGDGTVTKHFRERRVREDGSGNLLSQFILTT
PGRIIYNKAIQDSIVS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtgttcctactccttactccttactccctactacgcggctccgatggcgaacg
cggctccaatgcggaggttccctccgcttccgcccgcttggaaacctcgccatctgcccg
cttccctactccctactcccttacccctcaaatatgagaccaggattatcaaatcagttc
gactacgtaaaaattgcgatcgcctcgcctgaccggattcgggtctggggagaaagaacc
ttgcctaacggtcagttggtgggcgaggtgacaaagccagaaacaattaactatagaacg
ctcaagccagaaatggacgggctattttgcgagcgaatcttcggtccggcgaaagattgg
gagtgtcactgcggcaagtataagcgcgtccggcatcggggcattgtttgcgagcgttgc
ggtgtggaagttacggaatcccgcgtccgccgccaccggatgggttttatcaaactcgcg
gctccagttgcccacgtttggtatctcaagggtattcctagttatatttcgattttgtta
gatatgcccttacgggatgtcgagcaaattgtttactttaacgcttatgtcgtcctcaaa
ccaggcaacgccgagactttaacttacaaacaattgctcagcgaagaccagtggattgag
attgaagaccaactttacagcgaagattctaccctagaaggtatagaagtaggaatcgga
gctgaggcattagcgaatttgctctcggatatcaaactggaaccagaagcagaaacgctg
cggcaagaaattggtacggcaaaaggacagaaacgggcaaaactgatcaaacggctgcgg
gtgatcgataactttatcgccactggctcgaaaccagagtggatggtaatgagttatatt
ccggtaattcccccagacttgcgcccaatggtacagctcgacggcggacgatttgctacg
tccgacttaaacgatctgtatcgtcgcgtaatcaaccggaacaaccgtttggcgcgcttg
caagagattttggctcctgaaatcatcgtccgtaacgaaaaacggatgctgcaagaagcc
gtcgatgctttgatcgataacggtcggcggggacgcacggtggtaggcgcaaacaatcgt
ccgttgaaatccttatcggatattatcgaagggaaacaaggtcgcttccgccaaaacttg
ctcggcaaacgggttgattattcaggacgttcggtaatcgtcgtcggacccaaacttaaa
attcaccagtgcggtttgccacgggaaatggcaatcgagctattccagccgtttgtgatc
catcgtctgattcgcggtggaattgtcaacaatattaaagctgcgaaaaaactgattcag
cgcaatgaccccagcgtgtgggacgttttagaagaggtgattgaaggacacccagtcctg
ctcaaccgcgctccaacgcttcaccgcttggggattcaatctttcgagccaattttggta
gaaggtcgtgccattcagctccatcctttggtctgtccggcgttcaacgctgactttgat
ggcgaccagatggcggttcacgtgcctctgtccctggaatcgcagtcagaagcaagattg
ttgatgctagcttctaacaatattctgtctccagcaacaggcagaccgattattactccc
agccaagatatggttttgggctgttactacttaactgccgaaaatcccaacaacaatcgt
ggcgctggcagttactttgcatcgctcgatgacgcgatcgtagcttacgagcaagagcga
gtagacctacacgccaaagtttgggtacgctacgacggcaaagtagagacggcgaagcca
gacagcgagcctttaaaagtagaaaagcagggtgacggcaccgtgaccaaacactttcgc
gaacgacgagtccgagaggatggtagcggtaatttgctgtcgcagttcatcctgacaact
cctggtcggattatttacaacaaagcaattcaagactcgattgtcagctag
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