Chroococcidiopsis thermalis: Chro_0450
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Entry
Chro_0450 CDS
T02360
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cthe
Chroococcidiopsis thermalis
Pathway
cthe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cthe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Chro_0450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthe03021
]
Chro_0450
03400 DNA repair and recombination proteins [BR:
cthe03400
]
Chro_0450
Enzymes [BR:
cthe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Chro_0450
Transcription machinery [BR:
cthe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Chro_0450
DNA repair and recombination proteins [BR:
cthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Chro_0450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_4
RNA_pol_Rpb1_3
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
AFY85999
UniProt:
K9TVG6
LinkDB
All DBs
Position
502830..506876
Genome browser
AA seq
1348 aa
AA seq
DB search
MADGKEFIFRNRVVGKSQLRNLIAWSFTTYGTARTAVMADKLKDLGFRYATKAGISISVD
DLMVPPSKRSLLEAAEAEIRATEARYQRGEITEVERFQKVIDTWNSTSEALKDEVMSHFE
RTNPLNSVHMMSISGARGSIAQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEYII
SSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREFDCGTTRAIPVRPMMDGDRTLIP
IGNRLLGRVAAVDVIHPKTKEVLVQRNQPIHDELAQAVDKAGVEEVMVRSPLTCEAARSV
CQHCYGWSLAHAKMVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQARAEQD
GTIRMPRNLRNRPFRTRHGEDALMAENNGALTLELANGSKVNIPVNQGSIVYVNDGQTVT
VGQLIAEVPVGNRTTRVNTEKVTKDVASDLAGEVKFADVVAEEKTDRQGNTTTTASRGGL
IWILSGEVYNLPPGAEPSVNNGDRVEANSVLAQMKLTSVHGGVVRLPQAADGARQREIEI
ITASVVLDTATVRSESFQGREHYTIETNNGQQFSLLATPGTKVQNGQVVAELIDDRYRTA
TGGIVKFAGVEIGKKGKAKQGYEVVKGGTLLWIPEESHEVNKDISLLIVEDGTYVEAGTE
VVKDIFCQNSGVVTVTQKNDILRELVVKPGELLMLDDPEAALGRDGTLGQPGEEIVPGHT
LSELRYIEYVESPEGPALLLRPAIEYAVPDVPPVPSTQSVNQSGRRIELRSMQRIAFKDS
ERVKSIEGVELLRTQLVLEIEQDTSGEHGSSPMVADIELIPDAEDPELQRLQLVILESLT
IRRDVAADATQGSTSTTLLVEDGQNIPPGAVVARTAIQCKEAGEIRGIREGAEAIRRILV
LRESDRLSIPTKERPQVKIGDLVVAGMEIAPGAVVAESGQVLEIKKATGDKKEQEQPGDG
ALVSNAYEVVVRTGRPYRVSNGAVLQVEDGELVQRGDNLVLLVFERAKTGDIIQGLPRIE
ELLEARKPKEACILARAGGTVEYNRIEDETVAIKVIEDSGNLTEYPIGPGQNAIVSDGAH
IELGTPLTDGPANPHEILEIFYNRNAAEGVYASALEALQRVQTFLVNEVQSVYQSQGIDI
SDKHIEVIVRQMTSKVRIDDGGDTTMLPGELIELRQVEQVNEAMSITGGAKAQYTPMLLG
ITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFNTYEE
VSTTSTDDFDTMSTSVFDDGDDAMDVVLDDRTARAYNLEGMGDSFGFDRNAAILDEDDDL
MIDDSSAGDMDDDDDDDDDDDDFDDDDI
NT seq
4047 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggtaaggaatttatttttcgcaaccgcgtagttggtaaaagccagctgaga
aatctaattgcttggtcgttcacgacttacggcactgctcgcacggcagttatggcagat
aagctgaaagatttaggatttcgctacgcgacgaaagcagggatctcaattagcgttgac
gatttgatggttccgccttctaagcgatcgctcttggaagctgccgaagccgaaattaga
gccacggaagcgcgttaccaacggggagaaatcactgaggtcgagcgtttccaaaaagtg
atcgacacttggaacagtaccagcgaagccctcaaagatgaagtaatgagtcacttcgag
cggacgaatccgctgaactcggtacacatgatgtctatttctggggcgcggggttcgatc
gcccaggtgcggcagttggtcggaatgcgcgggttgatggcagaccctcaaggggaaatt
atcgacttgccaattaaaacgaatttccgcgaagggctgaccgttaccgaatacattatc
tcgtcctacggggcgagaaagggtctggtagatacggcgctgcgcacggcagactccggt
tacttaacacgacgcttggtagacgtatcccaagacgtgatcgtacgggaatttgactgt
ggtacgacccgcgccattcccgtgcgcccgatgatggatggcgatcgcactttgattccg
atcggcaatcgtttgctggggcgagtcgcggcagttgatgtcatccacccaaaaacgaaa
gaagtgttggtgcagagaaaccagcccattcatgacgaattggcgcaggcagtagacaaa
gcaggcgttgaagaagtgatggtccgatcgcccctcacctgcgaagcagcgcggtcggtc
tgccagcactgttatggctggagcttggcgcacgccaaaatggtggatttgggtgaagcg
gtggggatcattgccgctcaaagtattggcgaaccaggcacgcagctaaccatgcgtacc
ttccacacgggcggcgtatttaccggagaagtagcgcgacaagcacgggcagaacaagac
ggtacgattcggatgccgcgcaatctccgcaatcgtccgtttagaacccgccacggagaa
gacgcgctgatggcggaaaacaatggggcgctgactttggagcttgccaatggcagcaaa
gtgaatattcccgtcaaccaaggttcgatcgtgtatgtcaatgacggtcagacagtaaca
gttggacaactaatcgctgaagtccccgttggcaaccgtaccaccagagttaacacggaa
aaagttacgaaagacgtggcttcggacttggcaggagaagtcaaatttgcggatgtcgtc
gccgaggaaaagaccgaccgtcaaggtaacacgacgacgactgcatctagaggcggcttg
atctggatcttgtcgggagaagtttacaacttgcccccaggtgcagaacccagcgtcaac
aacggcgatcgcgtcgaagcgaatagcgtcttggcgcagatgaaactgaccagcgtgcat
gggggtgtcgtgcgcttaccccaagctgctgatggggcgcggcagcgagaaattgaaatc
attactgcctctgtggttctcgatacggctaccgtgcgatcggaaagctttcaaggtcgc
gagcattacacgatcgaaacaaataacggtcaacaattttcgctcttagcaaccccaggc
acaaaagtgcaaaacggtcaagttgttgcagagctaattgacgatcgctaccgcactgct
actggtggaattgtcaaatttgctggggtagaaatcgggaaaaaaggtaaggcaaagcaa
ggttacgaagtcgtcaagggtggaactttgttgtggattcctgaagaatctcacgaagtc
aataaggatatctccctgctaatcgtcgaggacggcacgtatgtcgaagcgggtacggaa
gtcgtaaaggatatcttctgccagaatagcggcgttgtcaccgtgactcagaagaatgac
attttgcgcgaactggtggtgaagccaggggaattgctgatgttagacgacccagaagca
gcactcggcagagacggaactttaggtcagcctggagaagaaatcgtcccaggacatacc
ctatccgaactgcgttatatcgagtatgtcgaatcgcctgaaggtccagccttactgcta
cgtcccgcaatcgaatatgccgtaccagatgttccacccgtacccagcacgcaatccgtt
aaccaatcgggtcgccggattgagttgcgatcgatgcagcgtattgcttttaaagattcc
gagcgggtgaagtcgattgaaggagtagaactgctgcggacgcaattggtcttggaaatc
gagcaagacacgagcggagaacacggtagttcgccaatggtggcagatatcgaattgatt
cccgatgcagaagatcccgaactccagcgcttgcagttggtaattttggagtctctaaca
atccgccgcgacgtagccgccgatgctacccaaggcagtacttcaaccacattactcgta
gaagacgggcagaatattccgcctggtgcagtggtggcacggacggcaattcagtgcaaa
gaagccggagaaattcgcggtattcgcgaaggtgcggaagccattcgccgcattctggtg
ttgcgagaaagcgatcgcctatccattccaaccaaagaacgtcctcaagtcaaaattggt
gacttggttgtagcaggtatggaaatcgctccgggagcagttgtggctgaatccgggcaa
gtactggaaattaagaaggcaacgggagacaaaaaagagcaggaacaaccaggcgatggt
gcgttggttagcaatgcttatgaagtggttgtacgcacaggtcgcccttatcgcgtcagt
aacggtgcggtattgcaagtcgaagacggcgaactggttcaacggggcgataacttagtg
ttgttggtctttgaacgggcaaaaaccggagacatcattcagggtttacccagaattgag
gaactactggaagcacgcaagccaaaagaagcgtgtatccttgcccgtgctggcggtacg
gtagaatacaatcggattgaggatgaaactgttgccattaaggtgattgaagattctggc
aatcttaccgagtatccaattggacctgggcaaaatgccattgtctctgatggagcgcac
atagagttaggtacgccactgaccgacggtccagcaaacccccatgaaattctggagatt
ttctacaatcgcaatgctgccgagggtgtctatgctagtgcgctggaagctttacagcga
gttcagacatttctagtgaatgaagttcagtccgtctaccagtctcaaggcattgatatt
tctgacaagcacatcgaagtgatcgtgcgtcagatgacttccaaggtgcggatcgacgat
ggtggcgacacgaccatgttgccaggggagttgatcgaactgcggcaagtcgagcaggtc
aacgaagcaatgagcatcactggtggggcgaaagcacagtatacgccgatgctcttgggt
attaccaaggcatcgctgaatacggatagcttcatttcagcagcttcgttccaagaaacg
actagggtactgactgaagcagcgatcgaaggtaaatctgattggttgcggggtctgaaa
gaaaacgtaatcatcggacgcttgattccagcgggaactggttttaacacctacgaagaa
gtcagtacgaccagtactgacgatttcgacaccatgtcaaccagcgtctttgatgatggt
gacgatgccatggatgtcgtcctcgacgatcgcacggctcgtgcctataacctagagggt
atgggagatagcttcggtttcgatcgcaacgctgccatcctggatgaagatgacgatctg
atgatcgacgactcttcagctggcgacatggatgatgacgatgatgacgatgatgacgat
gacgacttcgacgacgacgatatctaa
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integrated database retrieval system
