Chroococcidiopsis thermalis: Chro_2109
Help
Entry
Chro_2109 CDS
T02360
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase, Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cthe
Chroococcidiopsis thermalis
Pathway
cthe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cthe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Chro_2109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthe03400
]
Chro_2109
Enzymes [BR:
cthe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
Chro_2109
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
Chro_2109
DNA repair and recombination proteins [BR:
cthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Chro_2109
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
AFY87616
UniProt:
K9TZK2
LinkDB
All DBs
Position
2359944..2360873
Genome browser
AA seq
309 aa
AA seq
DB search
MPELPEVETVRRGANQVTLNREITGGDVLLDRTIAYPFSVADFLNGISGKAIAQWHRRGK
YLLAELVKGSREQGAIPSCKSQVASRKSQLIPNSEFRIPNSEFLGVHLRMTGQLLWLPQD
EPLHKHTRVRLFLAENWELRFVDQRTFGQMWWVPPERVVESVVTGLATLGPDPFSSDFSV
EYFATKLRDRRRPIKNALLDQSIVAGIGNIYADEALFRAGVQPQTLCADLRSPQISRLRT
AILEVLEASINAGGTTFSNFLNVQGVNGNYGGVAWVYNRAGKPCRICNTPILKLRLAGRS
AHFCPQCQK
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgaattgccagaggtagaaacagttcgacggggtgcaaatcaagtcaccctgaat
cgagaaattacgggtggggatgtgttgctcgatcgcaccatcgcctacccgttttctgtg
gcagattttctcaacgggatctcgggaaaagcgatcgcccaatggcatcgacgcgggaag
tatctgctggcagagttagtcaaagggagcagggagcagggagcaattccaagttgcaag
tcgcaagtcgcaagtcgcaagtcacaactaatcccaaattccgaattccgaattccgaat
tccgaatttcttggtgttcacttacgaatgactggacagctgttatggcttccacaggac
gagcctttacacaaacatacgcgagtccgattatttttggctgagaattgggaattgcgc
ttcgtcgatcaacgcactttcggacagatgtggtgggttcctccagaacgagtggttgaa
tcagtcgtgacgggattagcaacattgggtcccgatccgttttcttcagatttttctgtg
gaatattttgcgacaaaattgcgcgatcgccgtcgtccgatcaaaaatgccttattagac
caatcaatcgttgcaggaatcggtaacatctacgctgatgaagcgctgtttcgcgctggc
gtgcaaccccagaccttatgtgcggatttgcgatcgccacaaatatcgcgcctgcgaacc
gccattcttgaagtgttagaagcgagtatcaacgctggtggcacgacttttagtaatttt
ctcaacgttcaaggcgttaacggtaattatggcggtgtagcttgggtttataaccgagca
ggcaaaccctgccgcatctgcaatactcccatactaaaactacgtttagctgggcgatcg
gctcacttctgtccgcaatgccagaaatga
DBGET
integrated database retrieval system
