Chroococcidiopsis thermalis: Chro_3003
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Entry
Chro_3003 CDS
T02360
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cthe
Chroococcidiopsis thermalis
Pathway
cthe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cthe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Chro_3003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthe03400
]
Chro_3003
Enzymes [BR:
cthe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Chro_3003
DNA repair and recombination proteins [BR:
cthe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Chro_3003
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
Cas3-like_C_2
UB2H
AAA_22
AAA_16
Motif
Other DBs
NCBI-ProteinID:
AFY88470
UniProt:
K9U0V8
LinkDB
All DBs
Position
complement(3339279..3342950)
Genome browser
AA seq
1223 aa
AA seq
DB search
MAFSSIVRALGRSPLSTELISKLNRQQVCSLNGVSRLPKGLVASALAQAQQRHLLVICAT
LEEAGRWTAQLESMGWDRVHFYPTSEASPYEPFDPETEMTWGQMQVLADLIEETGGMRDK
GDKEASPSLLTPRSSPLIAIVATERALQPHLPPADVFQPYCLTISKGMEFDLGDFGDRLA
AMGYDRVPTVETEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPATQRSSVGG
TALDKISQVVLTPTNFAPIVKAALTEEQTEIVKTYLSPEERELFDAGNDPEGSRRFLGLA
FPQPASLLDYLPKDTIITIDELELCQAHSDRWVENSEEQWQLMIGSRERFGAGSGEEGDK
GDKGDKEDKGDNRQLPITNYQLPRVHRTFEDSLATAQGFQELYLSELAVEESSSANSAYV
TPLNLASRSIPVTPHAFGKLAETIRQERDRGFSTWLISAQPSRSVSLLQEHDCPAQFIPN
PRDFQAIDKLQLQRTPVALKYSGVAELEGFILPTFRLMVVTDREFYGQHSLATPSYIRKR
RRAASKQVDPNKLRPGDFVVHRNHGIGKFLRLESLTIDRETREYLVVQYADGLLRVAADQ
LGSLSRFRATDSKPPELNKMSSKAWANTKNRARKAIKKLAVDLLQLYAQRSQQSGYAYPI
DSPWQVELEDSFPYQPTTDQLKATQDVKRDMESDRPMDRLVCGDVGFGKTEVAIRAVFKA
VTAGKQVAFLAPTTILTQQHYHTLKERFAPYPVNVGLLNRFRSAEERKDLLKRLATGELD
IVVGTHQLLGKGVSFRDLGLLIIDEEQRFGVNQKEKIKALKTQLDVLTLSATPIPRTLYM
SLSGIREMSLITTPPPSRRPIKTHLAPYDTESIRSAIRQELDRGGQVFYVVPRVEGIEET
AATLREIVGGARIAVGHGQLDENQLESTMLSFSNGEADILVCTTIIESGLDIPRVNTILI
EDAHRFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDTARQRLRAIQEFTQLGSGYHL
AMRDMEIRGVGNLLGVEQSGQMDAIGFDLYMEMLEEALREIRGQEIPQVEDTQIDLNLTA
FIPTDYITDLDQKMSAYRAVAAAKTKEELIQLAADWSDRYGAIPTGATQLLRVMELKQLA
RKLGFSRIKPEGKQHVVLETAMEEPAWNLMIANLPDSLRSRFVYSPGKVTVRGLAVLKTE
QQLQTLIDALSKMQGAVPETVMV
NT seq
3672 nt
NT seq
+upstream
nt +downstream
nt
atggctttttcttctatcgtgcgtgccttagggcgatcgccactgtcaaccgaactcata
tctaaactcaatcgccagcaggtttgttctctcaatggcgtttcgcgcttgcctaaagga
ttggtggcttcggctttagcacaagcacaacagcgtcacctactcgttatctgcgccact
ctggaagaagccggacgctggacagctcaactcgaatcgatgggatgggatcgagtccat
ttttacccaacctcagaagcatcgccctacgaacccttcgaccccgaaaccgaaatgact
tggggacagatgcaggtgttggcagatttgattgaggaaacgggaggaatgcgggacaag
ggggacaaggaagcgtcgccctcactcctcactcctcgctcctcacccctcattgcgatc
gtcgccacagaaagagccttacaaccccacttaccaccagcagacgtgtttcaaccctat
tgtctgacgattagtaaggggatggaattcgatttgggtgactttggcgatcgccttgca
gcaatgggttacgatcgcgtacccacggtagaaaccgaaggacaatggagcaggcgcggc
gatatcgttgacgtgtttcccgtctcttccgaattgcccgtgcgtttggagtggtttggc
gatgaaatcgaacaaattcgcgagttcgacccagcaactcaacgcagttctgtaggtggc
acggcacttgacaagatatcacaagtcgtgcttacgccaaccaattttgctcccatcgtt
aaagcagcactaacggaggaacaaacagaaattgttaaaacctacctttccccggaagaa
cgagaactattcgacgcaggaaatgacccagaaggtagccgccgctttctgggtttagct
ttcccccaacccgcatccctgcttgactatttacccaaagatacgattatcaccattgac
gaactagaactatgtcaagcacatagcgatcgctgggtggagaactctgaagaacaatgg
cagttgatgatagggagtagggagcgcttcggtgccgggagcggggaagaaggagacaag
ggagacaagggggacaaggaggacaagggagacaatcgccaattaccaattaccaattac
caattaccaagagttcaccgcacatttgaagactctttagcaacagcccaaggatttcaa
gaattatatttatcggaattagcagttgaagaaagctcctcagctaattctgcttatgtg
actcccctcaatcttgccagtcgttcgattcccgttacgcctcatgcgttcgggaagtta
gcagagacaattcgacaagaacgcgatcgcggtttttcaacttggctgatttcggctcaa
ccatcccgttctgtctccctattgcaagaacatgattgtcccgcccaatttatccccaat
cctcgcgattttcaggcgatcgataaattgcaacttcagcgtacacctgtggcgttgaaa
tattcgggggtagcagaattagaaggttttattctgcctacatttcgtctgatggtggtg
actgaccgcgaattctacggtcagcacagcctcgctacccctagctacatccgcaagcgc
cgccgcgccgcctcgaagcaagtcgatccgaataagttgcgtccgggggattttgtcgtt
caccggaatcacgggatcggcaagtttttgcggctggaaagtctgacgatcgatcgcgaa
acgcgagaatatttagtcgtgcaatatgccgatggtttgttgcgcgtcgccgccgatcaa
ctcggttcgttgtctaggtttcgcgccaccgacagcaagccgccagaactgaacaaaatg
tcgagtaaggcgtgggcaaacacgaaaaaccgtgccagaaaagcaattaaaaaactagcg
gtggatctgctgcaattatatgctcagcgatcgcaacaatcgggttatgcttatccaatt
gattctccttggcaggtagaattagaagattctttcccctatcaaccgacaaccgaccaa
ctcaaagcaactcaagatgtcaagcgcgacatggagagcgatcgcccgatggatcgttta
gtctgtggcgatgtgggttttggtaagactgaagtagcaattcgcgctgttttcaaagct
gtcacagcaggtaagcaagtagctttccttgcccctaccaccattctgacgcaacagcac
tatcacacgttaaaagaacgctttgccccttatccggtaaacgtcggcttactcaaccgc
tttcggagtgccgaggaacgaaaagatctactcaagcgattggcgacgggtgaattagat
attgtggtcgggacgcaccaactactaggtaaaggtgtcagcttccgcgatttgggacta
ttgataatcgacgaagaacaaagatttggggtcaatcagaaagaaaaaattaaagctttg
aaaactcagttagacgtgctaactctttctgcgactcccattccccgcaccttgtatatg
tcattgtcgggaattcgggagatgagtttgattactacgccgcctccctcccgccgaccg
atcaaaactcacctcgcaccttacgatactgaatcaattcgtagcgccattcgtcaagaa
ctcgatcgcggcggacaagttttttatgtcgttccgcgtgtggaaggaattgaagagaca
gcagcgactttaagagaaattgttggcggggcgagaattgctgtcggacacggacaattg
gatgaaaaccaattagaatcaacaatgctttcctttagtaatggggaagccgatattttg
gtttgcaccacgattattgaatcgggcttagatatcccgcgtgtgaatacaattctaatt
gaagatgctcaccgcttcggtttatcccaactctaccagttgcgggggcgtgtcggacgg
gcaggaattcaggctcatgcctggttattttatcccaaacaacgggcgctatccgatacc
gcaaggcagcgtttgcgggcaattcaagaattcacccaactcggttctggctatcacttg
gcaatgcgcgatatggaaattcgcggtgtgggaaatttgttaggcgtagaacaatccggt
caaatggatgcaattggtttcgacctgtatatggaaatgttagaagaagccttgcgcgaa
attcgcggtcaggaaattccgcaagtggaagatacgcaaatcgatttgaatttgacagcg
tttattcccacagattacattaccgatttagaccagaagatgagtgcatatcgggctgta
gcagcggcaaaaactaaggaagagttaatccaacttgccgcagattggagcgatcgctac
ggggcaattcccacaggtgcaactcaattattgcgcgtcatggaattaaaacaactagcg
agaaaattaggatttagccgcatcaaacccgaaggtaaacagcacgtagttttagaaact
gcaatggaagaaccagcttggaatttgatgattgccaacttacctgatagtttgcgatcg
cgctttgtttactcgcctggtaaagtcaccgtgcgcggtttagcagtcctcaaaacggaa
caacaattgcaaactttaattgatgctttgagcaagatgcaaggtgcagttccagaaacg
gtaatggtttga
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