Chroococcidiopsis thermalis: Chro_3580
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Entry
Chro_3580 CDS
T02360
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
cthe
Chroococcidiopsis thermalis
Brite
KEGG Orthology (KO) [BR:
cthe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cthe03016
]
Chro_3580
Enzymes [BR:
cthe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Chro_3580
Transfer RNA biogenesis [BR:
cthe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Chro_3580
Prokaryotic type
tRNA splicing ligases
Chro_3580
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AFY89035
UniProt:
K9U2G7
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All DBs
Position
complement(4007764..4008945)
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AA seq
393 aa
AA seq
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MPYEKLEINTPAPVLSWANHALGHEETQMAKNVASLPFVFKHVALMPDVHLGKGALVGSV
VATKDAILPAAVGVDIGCGMAAIQTPYHAEQLEGKLKKIRLDIEASIPVGFNENKDVEKS
ITNWQHWHDFKDLHRGVQDLQGKAMKQMGSLGGGNHFLEVCLDTEDRVWLMLHSGSRNIG
NKLAQCHINTAKELAKLAGDRLPDPDLAYFVSGTSEFAAYWRDLQWAQNYARVNRDVMMA
RFKRVVEKHVAGGKPFKPLLEVNCHHNYAEKEVHFGEDVYVTRKGAVRAQTEDYGIIPGS
MGAKSFIVRGKGHAESYCSCSHGAGRLMSRNKAKNVYTLDDLIEQTKGVECRKDTGVLDE
IPGAYKPIDEVMNNQSDLVEIIATLKQVVCVKG
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgccatacgaaaaactagaaattaatacaccagcacccgtactttcttgggcaaatcat
gctttaggacatgaagaaacccagatggcgaaaaacgtggcatcgctaccatttgtattt
aaacatgtcgcattgatgcccgatgtccacttaggtaaaggtgctttagtcggctcggtt
gtagcaactaaagatgcaattttgcctgcggctgtgggagtagatattggttgtggcatg
gctgccattcaaactccatatcatgccgaacaattagaaggcaagttgaaaaaaatccgt
ttggatattgaagcatcaattccagttggttttaacgaaaataaagatgtagaaaaatct
attactaactggcaacattggcatgattttaaagatctacatcgcggggtgcaagacttg
caaggaaaagccatgaaacaaatgggttctcttggcggtggcaaccacttcttagaagtt
tgtctcgatacggaagatcgagtttggttgatgttgcattctggttcccgaaatatcggt
aacaagttggcacagtgccatattaatactgctaaagaactagcaaaattagcaggcgat
cgcttgcccgatcctgacttggcttattttgtttccggtacgtcagagtttgctgcttat
tggcgagacttgcagtgggcgcaaaactatgcccgtgtcaatcgtgacgtaatgatggca
cgctttaagcgagttgtagaaaaacatgtagctggtggtaagccattcaagcctctatta
gaagtcaattgccatcacaactatgccgaaaaggaagtgcattttggcgaagatgtttac
gtgactcgtaagggtgcggtaagggcgcagactgaagattatgggattatccctggttca
atgggtgcgaaatcatttattgtcagaggtaaaggtcatgctgaaagttattgttcttgc
agtcacggtgcggggcgtttgatgtctcgtaataaggcaaaaaatgtctatacacttgac
gatttgatcgagcaaacgaagggcgtagaatgccgcaaagacacgggtgtcttagatgag
attcctggggcatataagccgatagacgaggtaatgaataatcagtcagatctggtcgaa
attatagcaacattgaagcaagttgtttgcgtcaaaggttaa
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