Caldimicrobium thiodismutans: THC_0129
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Entry
THC_0129 CDS
T04224
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THC_0129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthi03021
]
THC_0129
03400 DNA repair and recombination proteins [BR:
cthi03400
]
THC_0129
Enzymes [BR:
cthi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THC_0129
Transcription machinery [BR:
cthi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THC_0129
DNA repair and recombination proteins [BR:
cthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THC_0129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
Tipalpha
Luteo_PO
Motif
Other DBs
NCBI-ProteinID:
BAU22531
UniProt:
A0A0U5AEV3
LinkDB
All DBs
Position
132990..137051
Genome browser
AA seq
1353 aa
AA seq
DB search
MKDLLSILEKPKDMIRLRAVKVALASPEKIREWSYGEVKKPETINYRTLKPERDGLFCAK
IFGPVRDYECVCGKYRGQKHRGVICEKCGVEVIQSKVRRERLGHIELAAPVAHIWFLRSI
PSKIGLLLDMTLKEVESVLYLERYVVIESAIEEFPVGTLLTEEKYYYLQETYGDKIKIGT
GASAIYDLLKGLDLEKLAKDIQIEMQTTHSEARRKKLGKRLQLIRSFLESGNKPEWMILQ
VIPVIPPELRPLVPLEGGRFATSDLNDLYRRVINRNVRLKKLIDLDAPEIILRNEKRMLQ
EAVDALFDNGRRGRPVTGPNRRPLKSLSDVLKGKQGRFRQNLLGKRVDFSGRSVIVAGPE
LRMHQCGLPKKMALELFKPYIFGWLERNGYATNIKTARKLVEEEHMVVWDALEEIVKEYP
IMLNRAPTLHRLGIQAFEPVLIDTKAIQLHPLVCVAYNADFDGDQMAVHVPLSVEAQIEN
RVLILSTNNILLPANGVPVVYPTQDMVLGSFYMTMERPFAPGEGKIFKDKEEVFLAYLSG
EVHLQAKIKVRLNGKLVDTTVGRIIFSSIVPEEIPFEEYNKPLRKKELQDLINVSYRRAG
LKKTVLFADRIKDLGYAMATKAGLSISIDYLVIPEKKTEILREAERRIAELWEQYQDGLI
TESERYNKAIDIWSTTTERITDEMMKRMETGEYIGPNGEKVMGPSFNPVYIMAFSGARGS
KDQIRQLAGMRGLMAKPSGEIIETPIKSNFREGLSVLEYFVSTHGARKGLADTALKTANA
GYLTRKLVDVAQDCIVSEEDCGTIDGLEIGHLIEGGEIIEPVWDRVLGRVALEDIVDPIT
GEILVKANEEIDERKALKLKEAGIEKVAIRSVMTCEAKFGVCRRCYGRDLATGRLVEIGE
AVGIIAAQSIGEPGTQLTMRTFHIGGAVGKALEQSQHVAQSQGKVKFINLRAVRRSDGSL
VALNRQGEIALEGPDGRILEKYPVVYGAKIRVEEGEVVKAGTLLVEWDPYTMPIITEASG
KVKFGDIIDGVTVDERIDPTTGRITIVVRDYKLTDYRPRVSIKDEKGRTIDLPEGRGKAR
YELPVGAIISVQEGDQVEAGDVIARIPREALKAKDITGGLPKVTDLFEARKPKESAIISE
IEGRILFEKDVRGRKRLVVQPEIGEAKEYMLPKGKYIVVREGDVVKPGEPLIEGSPNPHD
ILKVAGIKGVASFLVEEIQEVYRLQGVKINDKHFEVIIRQMLKKVKIKDAGDTPFMIGEY
VDRVHFEEENEKVLAQGGKPAVAEPVILGITKAALLTDSWLSAASFQETTRVLTEASLAG
KIDYLKGLKENVIIGRLIPAGTGRVLYEELGWV
NT seq
4062 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacctcttaagtatccttgaaaaacccaaggacatgattcgccttagggcagtt
aaggttgcattagcaagccctgagaagattagggaatggagttatggtgaggtaaaaaaa
cctgagaccatcaattatagaactcttaagcctgagagagatggccttttctgtgccaaa
atttttgggcctgtaagggactatgagtgcgtctgcggtaaatacaggggacagaaacac
agaggggttatttgcgaaaagtgtggagttgaggttattcagagcaaagttcgccgagaa
agacttggacacattgaacttgcagctcccgttgcccatatctggttcttgagaagtatt
ccctcaaaaattgggcttcttctggatatgactctgaaagaagttgagtcagttctttat
ttagaaagatatgtggttattgaaagtgccatagaagagtttcctgttggcactctttta
actgaggagaaatattactatcttcaggagacttatggagataagattaagatcgggaca
ggcgcttcagctatttatgaccttcttaagggccttgacctggaaaaacttgctaaggat
attcagatagagatgcaaacaactcatagtgaggccagaaggaagaagttaggaaaaagg
cttcaacttatcagaagctttcttgaatctggcaacaaacctgagtggatgatcttacag
gttattccagttattcctcctgagcttaggcctcttgttccccttgagggaggtagattt
gcaacttcagatctaaacgatctttacagaagggttatcaatagaaatgtgcgtttaaaa
aaacttatagaccttgatgccccggagattattctcaggaatgaaaagagaatgcttcag
gaggcggttgatgccctttttgacaatggaaggagaggaagaccggttactggccctaat
cggagacccctcaaaagcctttcagatgtcttaaagggtaagcaggggcgctttagacag
aatcttctgggaaaaagggtagatttttctggaaggtcagttattgtggctggtccggag
ctcaggatgcaccagtgtgggcttcccaagaagatggctcttgagctctttaaaccctat
atctttggctggctggaaagaaacggatatgccaccaatatcaaaactgcaagaaaattg
gtagaagaagagcatatggtggtctgggatgcccttgaggagattgttaaggagtatccc
ataatgctcaaccgagcacctacgcttcatcgtcttggaatacaagcctttgaacctgtg
cttattgataccaaggctattcagcttcatccccttgtgtgcgtagcttacaatgcagac
tttgatggagaccagatggcagtgcatgtgcctctctctgttgaggctcagattgagaac
cgtgttcttattctttccactaataatattctgcttcctgccaatggggtgccagttgtt
tatccaacccaggatatggtgcttggctctttttatatgaccatggagagaccttttgct
cctggagaggggaagatttttaaagataaagaggaggtctttttggcctatctttcaggc
gaggtgcacctccaggccaaaattaaggtgcggctgaatggaaaacttgtggatacaacg
gttggaaggattattttttcaagtattgtgcctgaggaaataccctttgaggaatataac
aaacccttgaggaaaaaggaacttcaggatttaatcaatgtctcctatagaagggctggc
cttaaaaagactgttctctttgcggatcgcattaaagatctgggttatgccatggctaca
aaagctgggctttcaatttccatagattatttagtgattcctgagaaaaagacagagatc
ttaagagaggctgagagaagaattgctgaactttgggagcaatatcaggatggtttaatc
accgagtctgagagatacaataaggccatagatatctggtccacaactacagaaaggatt
accgatgagatgatgaagcgtatggagactggagaatacattggtcctaatggagagaaa
gtgatggggccaagttttaatcctgtttatataatggctttttcaggagcccgtggatca
aaggaccagattagacagcttgctggtatgaggggtcttatggcgaaaccttcaggagag
atcattgagacccctattaaaagtaattttagagagggcctttcagttcttgaatacttt
gtctccacccatggagcaagaaaaggattggctgataccgctttgaagaccgcaaatgca
ggatatcttacccgaaaattagtggatgtcgctcaggactgcattgtatcagaagaggat
tgcggaaccattgatggtttagagatcgggcatctcattgaaggtggagaaatcattgag
cctgtttgggacagggtgcttggaagggttgcgcttgaagatattgtagatcctattaca
ggagagattctggttaaggcaaatgaggaaattgatgaaaggaaggcccttaaacttaag
gaagctggaattgaaaaagtagctatccgttcggtgatgacctgtgaggccaaatttggg
gtatgcagaaggtgttatggaagagatctggctacaggaaggcttgttgagataggagag
gctgtgggaataattgcagctcaatccattggtgagcctggaactcagcttacaatgaga
accttccacattggtggtgctgtgggtaaggcccttgagcagagtcagcatgtggctcaa
tctcaggggaaggtaaaatttatcaatttgagggctgtaagaaggtctgatggatctctg
gtggctttaaatcgtcagggagagatagctcttgaaggcccagatggaagaattcttgaa
aagtatcctgtagtttacggagctaaaatccgtgtagaagagggagaggttgttaaggcc
ggaactcttcttgtagagtgggatccctataccatgcctatcattactgaggcctctgga
aaggtgaaatttggtgacatcattgatggtgtaactgtggatgagaggattgatcccact
acaggaagaattactattgtagtaagagattacaagcttaccgattatagacccagagtc
tcaattaaagatgagaagggaagaactattgatcttccagaagggagaggaaaagcaaga
tatgaacttcccgtaggggcaattataagtgtgcaggagggagatcaggttgaggcagga
gatgtaatagcccgtattcccagagaggcccttaaggccaaagatattacgggtggtctt
cctaaggttacagatctctttgaggccagaaaacccaaagaaagcgccataattagtgag
attgagggaagaatcctttttgaaaaggatgtgcgtggaagaaaaaggcttgttgttcag
cctgaaatcggagaggccaaggaatacatgctacccaaaggtaaatacattgtggtgcga
gagggtgatgtggttaagccaggagaacctttaattgaggggtctcctaatcctcatgac
atcctcaaggtagcaggtataaagggagtggcaagttttcttgtggaagagattcaagag
gtttaccgactgcaaggtgttaaaatcaatgataaacactttgaggttataatcaggcag
atgttgaaaaaggtaaagattaaggatgccggggatactccctttatgataggagaatat
gtggatagggttcactttgaggaggagaatgaaaaggttctggctcagggtggaaagcca
gctgtggctgagccagttatccttggaattaccaaggcagcccttcttactgattcttgg
ttatcagcagcctctttccaggagacaactcgtgttttaacagaggcttctttggctggt
aaaattgattatctcaaaggactaaaggaaaatgtcataattggaagacttattccagct
ggaacaggaagagttttatatgaagaacttggatgggtatag
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