Caldimicrobium thiodismutans: THC_0162
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Entry
THC_0162 CDS
T04224
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THC_0162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthi03019
]
THC_0162
03016 Transfer RNA biogenesis [BR:
cthi03016
]
THC_0162
Enzymes [BR:
cthi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
THC_0162
Messenger RNA biogenesis [BR:
cthi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THC_0162
Transfer RNA biogenesis [BR:
cthi03016
]
Prokaryotic type
tRNA degradation factors
THC_0162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
KH-I_KHDC4-BBP
OB_RRP5_4th
KH_2
Motif
Other DBs
NCBI-ProteinID:
BAU22562
UniProt:
A0A0U5AKV6
LinkDB
All DBs
Position
complement(166527..168611)
Genome browser
AA seq
694 aa
AA seq
DB search
MERVEIRLDGRDPIIIETGAYARLAGASVVVKQGGTAVLVTACISEKPLEGFDFLPLSVD
YREQSSAWGRIPGGFLKREGKPTDREVLVSRLIDRSLRPLFPEGFSHEVVVTALTLSADE
KHDPDVLSLLGASAALILSPAPFEGPIGGLRVARSNGKFILNPSYEERQNSDLDLVVAFT
EDSLVMVEGGGKEIPEETLLQALFFALEQGKVLILSQKGLAEKLKPQKLTFTSPYADQEL
YNFVELKTKTKVLSALGIQDKIERHRVLDLIFEEASSEIEESQRVKLAFFYKKLLQRLLR
ESLFYQGRRIDGRKPEEIRPINIEVHPFERPHGSAIFTRGQTQVFATVTLGSSESAQLVE
TIFEGETFKRFMLHYNFPPFCTGEARPWGPPRRREIGHGALAERALEPLIPSEEDFPYII
RIVANVLESNGSSSMATVCAGSLALFDAGVPVKKHVAGIAMGLATFEDKYLILTDILGDE
DQLGDMDFKVAGTREGITSVQMDIKIKGLKREVLSKALEQARLARLFILDKMYAVLPQPR
AELSPFAPCIEIITVPEDKASLIIGPGGKTVKDIRDRTGTTIWVLEGGRVSISGPNREGV
ESAKREILNLVAEVEIGKIYDGKITRIEPYGLFVEVLPGKIGLLHVSKMDNPPRDLKSVY
KIGDKIRVRVIEIDEAGRFKLTTLLGTEDAGPLL
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaaagagttgagattagattagatggaagagatcccattattattgaaacaggtgca
tatgcccgtttagccggggcctctgttgtagtaaaacagggaggaacagctgttcttgtc
actgcctgtattagtgaaaaacctcttgaggggtttgactttcttcccctctcagttgac
taccgggagcaaagttctgcctggggtaggatcccgggaggatttctaaaaagagaggga
aaacctacagatagagaagtgttggtctcccgccttatagatcgttctttgagacccctt
tttcctgaaggtttttcccatgaagtagtggttacagcacttaccctttcagctgatgaa
aaacatgaccctgatgtcctctcccttctgggggcttcagctgccctaatcctttctcca
gccccctttgaaggacctatcggggggttgagagttgctcgcagcaatgggaaatttatc
ctgaatccctcctatgaggaaagacaaaactctgatcttgaccttgttgttgcctttaca
gaggactctcttgtaatggtggaaggaggaggcaaagaaatccctgaagagacgctctta
caggcccttttctttgccttagaacaaggaaaagtgcttatcctttcccagaaaggttta
gctgaaaaactcaaacctcaaaaactcacctttacctcaccctatgcagatcaagagctt
tataactttgtggagcttaaaaccaaaacaaaggttttgtctgcccttggcattcaagac
aaaattgagaggcacagggttcttgacttgatttttgaagaggcctcctctgaaattgag
gagtctcaaagggtaaaattagcctttttttataaaaaacttctccaaaggcttttaagg
gaaagcctcttttatcagggtagacgcatcgatggaagaaaaccagaagagataagacct
ataaacattgaggttcacccctttgaaagaccccatggttcagctatatttacaaggggt
cagacccaggtttttgcaactgttacccttgggtcaagtgaatctgctcagcttgtggag
actatctttgagggagaaacctttaaaagatttatgctccactacaactttccacccttc
tgcacaggagaggctcgtccctggggacctccaaggagaagagaaattgggcatggtgcc
cttgctgaaagagcccttgagcccctgatcccatctgaagaagattttccctatatcata
agaattgttgccaatgtgcttgaatccaatggttcttcctctatggcaactgtttgtgca
ggatcccttgccctctttgatgcaggagtaccagttaaaaaacatgttgctggcattgcc
atgggacttgcaacctttgaagataagtatcttattcttacagatatcctgggagatgag
gatcagctgggagatatggactttaaggttgctggaacccgagaggggataacaagcgtg
cagatggatataaaaataaagggtctaaaaagggaggttctctcaaaggctctggaacag
gcaaggcttgcgaggctctttatccttgataaaatgtatgcagtcttacctcaacccagg
gctgaactttccccctttgccccctgtattgaaattatcaccgttccagaggataaggca
tctttaatcataggccccggaggaaagaccgttaaagatatccgggatagaactggaact
accatctgggtgcttgaaggaggcagggtctccatatctggtccaaatagggaaggagtt
gaatctgctaaaagggaaatcttaaatcttgtggcagaggttgagataggaaagatttac
gatggcaagatcacccgcatagaaccctatggactctttgttgaggttttaccgggaaag
atcggacttctccatgtctccaaaatggataatcctcccagagatctaaaaagtgtctat
aaaataggagataaaattcgggtcagggtcattgagatagatgaggcaggacgatttaag
cttaccacccttctgggaacagaagatgcaggacctctattataa
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