Caldimicrobium thiodismutans: THC_0381
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Entry
THC_0381 CDS
T04224
Name
(GenBank) DNA helicase UvrD
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03420
Nucleotide excision repair
cthi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THC_0381
03430 Mismatch repair
THC_0381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthi03400
]
THC_0381
Enzymes [BR:
cthi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
THC_0381
DNA repair and recombination proteins [BR:
cthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THC_0381
MMR (mismatch excision repair)
Other MMR factors
THC_0381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
AAA_19
UvrD_C_2
Cas_Cas4
AAA_30
AAA_11
DUF3799
Dna2
Motif
Other DBs
NCBI-ProteinID:
BAU22779
UniProt:
A0A0U4W0U1
LinkDB
All DBs
Position
complement(381384..384209)
Genome browser
AA seq
941 aa
AA seq
DB search
MNAIDKIKEIIPSLNDDQIEAITTTDGPLLIIAGPGTGKTLTLVARTLYLLISEKAQPDE
IILTTFTEKAAYELRDRISQLARKINYQGQLHLIKMGTIHSLCNEYIMKFLSYTPLKRGY
SVLEELTQIFFIYENFDEVMIKRDGKFLGKWAKKWRAIKEVVPYLNKITEEMIDISKLED
SNDEFLMALAGCYKAYCQKLFETNRVDFAHLLKIFYELLCNEKVYRKIKSKIRYIMVDEY
QDTNYIQEQILLKLASPENNICVVGDEDQSLYRFRGATVRNILEFPKHFKNCKQIKLTIN
YRSHKKIIEKYNKFITSIDWNGFRYPKEIKPDPSAEFPEYPAVFCIWGRDEKDEAKRVVQ
LIKFLKNKKIIEDWSDVSILLKSVKSEHSSHYINALKDDNIPYFSPRAKKYFENTEVKLL
IACYSIIFGFYGDILKEYPHREYIEESIKLLPKNINQALKDYLRRKVRQIENLKTGSLDL
TILDYFYQLLAYQPFSAFLKDKNKAYNLSIFSKLLSVFMDYYDISLVTAKNKEFIKNYLF
GSFLNFLMQTGIDEYEDPYNPIPKGFVQIMTIHQAKGLEFPVVLVGSLHKKFAVQKQVDR
DLLPFSKRGTFETEEQMTKFDRLRHYYVAFSRAQKLLVLTTPEKPQDWFSTIWEGLDQYP
YVEKETLQVQKFQSKPQFVPKKSYSLSNINVYETCPQQYLFYKEYEFQPSRSAQVLFGSL
VHHTIEDIHRAVLDRKSFTTQDIENWFEQNYKALLLSGLRPISKTQKEVALKQVINYFNQ
NQDILERISETEVEVSVEKEDYIITGKIDLLMSKDGKFEILDFKTQPKQEKNPELIDKYF
KQLCLYAYILKERYNKPVEKIYIYWTSEEKRKDALMEMKYSEKDIEAAWNYFDEVVKKIK
SENFRVNIPPDTEKVCKECDFRFYCSQNGIIKFKTKELEEV
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcaattgataaaataaaagagattattccttctttaaatgatgaccagattgag
gcaattactacaaccgatggacctcttcttattattgcaggtcctggaacaggtaagaca
cttacccttgttgcaagaaccctgtatcttcttatctctgaaaaggctcaaccagatgaa
attatacttacgacctttactgaaaaggctgcttatgaattgagagacagaataagccaa
cttgcacgaaaaattaattatcaggggcaactccatcttataaagatgggaactatccat
agtttatgtaatgagtatattatgaagttcctttcttatactcctcttaaaagaggatat
tcagtattagaggagttaacgcagatattttttatttatgaaaattttgatgaagtaatg
attaaaagggacggaaagtttttaggcaaatgggctaaaaaatggagggcaattaaagaa
gtggttccatatctaaataaaataacagaggaaatgatagatatttctaaattagaagac
tctaatgatgaatttctaatggctcttgcaggttgttataaagcatattgccaaaaatta
tttgagaccaacagggtggattttgcccatcttctaaaaatcttttatgagttactatgt
aatgaaaaggtttatcgaaagataaaatcaaaaataagatacataatggtagatgagtat
caggacacaaattatattcaggagcagattctacttaaacttgcaagtcctgaaaataat
atatgtgtggttggagatgaagaccaatctttataccgtttcagaggagcaacggtaaga
aacattttagaatttcctaaacactttaaaaattgtaaacagataaaattgacaatcaat
tacaggtcgcataaaaagataattgaaaaatataataaatttataacttcaattgactgg
aacggatttagatatccaaaggaaataaaacctgacccttctgcagaatttcccgaatat
ccggctgttttttgtatctggggaagagacgaaaaggacgaagcaaagagagttgttcaa
cttataaaatttttaaaaaacaaaaagattattgaagattggagtgatgtttcaattctt
ttaaaaagtgttaagtctgaacacagttcacactacattaatgcattaaaagacgataac
atcccttatttttctccacgggcaaagaagtattttgaaaatacagaagttaaattactc
attgcttgttattcaatcatttttgggttttatggagatatacttaaagaataccctcac
agggaatacattgaagagtcaataaaattattacccaaaaacataaaccaggcactcaag
gattacttgcggagaaaggtaagacagatagaaaatttaaaaacaggttcccttgacctg
acaatacttgattacttttatcagctccttgcatatcaacctttttctgcgtttcttaaa
gataaaaacaaagcatataatctttctattttttcaaagcttctctcagtgtttatggat
tattacgatatttcactggtaacagctaagaataaagaatttattaaaaattatctcttt
ggcagttttctaaattttctaatgcaaacaggaattgatgaatatgaagacccatacaat
cctatacccaaggggtttgtccagattatgacaattcatcaggcaaaagggttagagttt
ccagtagttcttgtaggttcgctccataaaaaatttgctgttcaaaagcaggtggaccgc
gaccttcttccattctctaagagaggaacttttgaaactgaagaacagatgactaagttt
gacagattaagacattattatgttgctttttccagggcacaaaaattgctcgtcttaacc
acaccagaaaaacctcaggattggttttctactatctgggaagggcttgatcagtaccct
tatgtggaaaaagaaacattacaggtgcaaaaatttcagtcaaaacctcaatttgttcct
aaaaaatcgtattctctttcaaacattaatgtttatgagacctgtccccaacagtatctt
ttttataaagaatatgagtttcagccttctcgttctgcccaggttttgtttggaagtttg
gttcaccatacaatagaagacatccatcgtgcggttcttgatagaaaaagttttacaacc
caggatatagaaaactggtttgagcaaaattataaagccctgctcctttcaggattaaga
cctatttcaaagacacaaaaagaggtagccttaaaacaggtgataaattacttcaatcaa
aaccaggatattcttgaaaggatttctgaaacggaagtggaggtctcggttgagaaagaa
gattatataattacaggcaaaatagatcttttaatgtcaaaggatggaaaatttgaaata
cttgatttcaaaacacagccgaaacaagagaaaaatcctgaacttattgacaaatacttt
aaacaactttgtttatatgcgtatattttaaaagaaagatataataagccagtagaaaaa
atatatatctactggacatcggaagaaaaaagaaaggatgccttgatggaaatgaagtat
tcagagaaagatatagaagcagcgtggaattattttgatgaagtggttaaaaaaattaaa
tcagaaaattttagagtcaatattccacctgatactgaaaaagtttgtaaggagtgtgat
tttagattttattgttcgcaaaacggcataattaaattcaaaacaaaggaacttgaggag
gtataa
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