Caldimicrobium thiodismutans: THC_0546
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Entry
THC_0546 CDS
T04224
Name
(GenBank) UPF0042 nucleotide-binding protein TOPB45_1388
KO
K06958
RNase adapter protein RapZ
Organism
cthi
Caldimicrobium thiodismutans
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthi03019
]
THC_0546
Messenger RNA biogenesis [BR:
cthi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
THC_0546
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RapZ-like_N
PapZ_C
AAA_22
Zeta_toxin
AAA_29
AAA_18
CoaE
AAA_23
ABC_tran
AAA_16
AAA_21
AAA_24
AAA_27
nSTAND3
AAA_28
AAA_30
RsgA_GTPase
SKI
Motif
Other DBs
NCBI-ProteinID:
BAU22940
UniProt:
A0A0U5AG09
LinkDB
All DBs
Position
complement(543223..544092)
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AA seq
289 aa
AA seq
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MKPAVVIITGESGAGKSTALKAFEDLGYLAIDNFPVRLLLPFLDEIRTGELAEKIALVMD
LRDPFFLQEFPNTIAKLREKKYSFDIIFLTADLKALITRFSQTRRPHPFLQELKDIKAAI
VLEKDKLALIKDYVTLFLDTSNFNVHQLRHEIFKIYGQRKELQYILLHIISFGYKFGIPY
EANYLFDARVLPNPYFVPELKDLSGETLEIQKFLLKEPRTSEFLDYVYNFIKWALPLHRA
EGRNFLALGIGCTGGRHRSPALALLLAERLKKSEIDTEVVVTLRDVERD
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgaaacctgctgtagtaataattaccggggaatcaggggcaggaaaaagcactgccctt
aaagcctttgaagatctgggctatctggctattgataattttcctgttagattgctttta
ccttttcttgatgaaattagaacaggggagcttgctgaaaaaatagccctggttatggat
ttaagggaccccttttttttgcaagaatttccaaataccatagccaaattaagagaaaaa
aaatacagctttgatataatttttcttactgcagaccttaaggcgcttattactcggttc
agtcagaccagacggccccatccctttttacaggaactcaaggatataaaggcagctatt
gttctggaaaaagataaattagccctgattaaagactatgtaaccctttttttagatacc
tctaattttaatgttcatcaattgagacatgaaatattcaaaatctatggtcagaggaaa
gaattgcaatatattctcttacacattatttcttttggatataaatttggtatcccttat
gaggctaattatctttttgatgctcgggtccttcctaatccctattttgtgcctgaactt
aaggacttaagcggagaaaccctggagattcaaaaatttcttttaaaggagcccaggact
tctgaattccttgattatgtttataattttataaaatgggctttacctcttcatcgggct
gaagggagaaattttttagcccttgggattggatgcaccggtggaaggcacagaagtcct
gctttagctttattacttgcggaaagacttaaaaaatcagaaattgatacagaagtagtg
gtaactttaagagatgtggagagagattaa
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