Caldimicrobium thiodismutans: THC_0978
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Entry
THC_0978 CDS
T04224
Name
(GenBank) hypothetical protein
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
cthi
Caldimicrobium thiodismutans
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cthi03016
]
THC_0978
Enzymes [BR:
cthi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
THC_0978
Transfer RNA biogenesis [BR:
cthi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
THC_0978
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GFIT
Motif
Pfam:
RNB
HTH_RNase_II
MSSS
Motif
Other DBs
NCBI-ProteinID:
BAU23362
UniProt:
A0A0U5ANB5
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All DBs
Position
complement(986321..988306)
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AA seq
661 aa
AA seq
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MSPENLLYHLVDLFYKDKKVVAFVKDIKGKRLHLLFPTGREELVSAQAVVSIGKQKVNPD
NLIFLQNLLKEKQDKREKLKENFNLRELWEIVTEEMDKGSAWELVELYLARIPDCDEVAA
FMRKALEDKLYFALEAPDILKIRKREEVKALQLQREREYERLKILNEGEMFLSALMSGKQ
SPLSKDRESFWQRALKEFVLKEGTTEMGRLAEEVLKKHQLNDPLKIVDLLSRACLIERDW
FFELEKLNFPTEFKKEELEEAEKIQTLQRSSSLKDLTGLFTFTIDAPDTEDFDDALSVEE
KGEHLVLYVHIAEVASYIRPGSTLWEGALERASTLYLPEGVLPMLPFSLSHEKFSLKKNE
PRPALTFKFEIDSANQVCSFEIIPSLIQVKERYTYTEVDNLLLKGDLFFKRLYALLIKQK
EIRYEKGAFAVILPEIQVRVLPDGEITVQKIEMTPSRDLVAEAMILTNYYSAKFMAEREI
PVLYRTQKEPFQAIEERFDSLYHQILQLKFMAKSELSIEPGYHSGLGLPYYTTLTSPIRR
FLDLLAQYQLEAYLKGEKFLSKEDLLKILPDLQSNLQRANYLQNRRKKYFLLKYLQKYHS
QDTLRGILLEVQARKARVYLPDYNLTGEVLSLKNNLHAGMEVIVKPEKIKPLQEVLRLRI
V
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atgtctcctgagaatcttctttatcacttagtggatctcttttataaggataaaaaagta
gttgcctttgttaaggatataaagggtaagagactgcaccttctttttcccacaggaagg
gaagagctggtaagtgcacaagcagtggtaagtattggtaaacaaaaagttaatccagat
aatcttatttttcttcagaatttacttaaggaaaaacaggataaaagagaaaaattaaag
gagaattttaacttaagagaactttgggagattgttacagaggagatggataaaggatcc
gcctgggagcttgtggagctctatcttgccagaattcctgattgtgatgaggtagctgct
tttatgcgtaaggcccttgaagataagctttattttgccttggaagctccagatatctta
aagataagaaaaagagaagaggtaaaggccttacagcttcagagggaaagggagtatgaa
aggcttaaaatcttaaacgaaggagagatgtttctttcagctttaatgagtggaaaacaa
agtcctttatctaaggacagggaatctttctggcagagggctttaaaagagtttgtgctt
aaagaagggacaactgaaatgggaaggcttgctgaggaggttttgaaaaaacatcaacta
aacgatcctcttaagattgtggatttactttcccgggcttgccttattgaaagggactgg
ttttttgaacttgaaaaattaaactttccaacagaattcaaaaaagaagaacttgaggaa
gcagaaaaaatccaaactttacaaagatcctcttctttaaaagaccttacagggcttttt
acttttaccatagatgctccggataccgaggactttgatgatgctctgagtgtggaagaa
aaaggggaacacttggtgctttatgttcatattgcagaggttgccagttatataagaccg
ggctcaactctttgggaaggggctttggagagggcttccaccctttatcttcctgaagga
gtccttccaatgcttccattttctctttcccatgaaaaatttagtctgaaaaagaatgaa
ccaagacctgccttaactttcaagtttgaaatagattcagctaatcaagtgtgttccttt
gagataattccatccctcattcaggtaaaagaaagatatacctatacagaggtagataac
cttcttttaaagggagaccttttttttaagagactttatgccttgctaatcaaacaaaaa
gagattcgctatgaaaaaggggcctttgcagtgatcttgccagagattcaggtaagagtt
ttgcctgatggtgaaataactgttcagaagatagagatgacgccttccagggatcttgtt
gccgaggccatgatcctcaccaattattattccgcaaaatttatggcagaaagagaaatc
ccggtgctttacagaactcaaaaagagccctttcaggctattgaggagcgctttgactcc
ctttatcatcaaattttacagcttaaattcatggccaaatctgagctttccatcgaacct
ggatatcactcaggccttggcctgccctattatacgacccttacttcacctatccgcaga
tttctggatcttctcgctcaataccaacttgaggcctatttaaaaggtgagaagttcctt
tccaaggaggaccttttaaagattctaccagatttacagagtaatctccagagggctaac
tatcttcagaatagaagaaagaaatatttcctgctcaaatatttgcaaaaataccattct
caagatacccttagagggattctccttgaggttcaagccagaaaggcaagggtctatcta
cctgattataatttaacaggagaggtcctaagtttaaaaaataatcttcacgcagggatg
gaggttattgtaaaacctgaaaagataaaaccccttcaggaggtcctgcgtttgaggata
gtttaa
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