Caldimicrobium thiodismutans: THC_1135
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Entry
THC_1135 CDS
T04224
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
THC_1135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthi03400
]
THC_1135
Enzymes [BR:
cthi01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
THC_1135
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
THC_1135
DNA repair and recombination proteins [BR:
cthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
THC_1135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
BAU23509
UniProt:
A0A0U5BXQ6
LinkDB
All DBs
Position
complement(1148031..1148840)
Genome browser
AA seq
269 aa
AA seq
DB search
MPELPEVETIKRDLEKILTGAILKKIIPYNLRFLEKNNLSLQEFKSLEGERLNSFLRKGK
FLALLFKERALILHLGLTGSLLLNSKNSSPSPHNIFSLIFDQGELLFRDPRKFGKVFLLS
MDDLSTFLNHLGVDALELTFEELKKILQGHRGRVKNLLLNQRIIAGLGNIYTDELLFRAK
ISPFRRGMELSEEEIYRLYQEMQSLLAEAIALRGSSIRDYVDSEGKKGRFQEKHLVYGKS
GTPCPICQTILKRTIIAQRGTTYCPNCQK
NT seq
810 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaactccctgaagtggaaactataaaaagggatcttgaaaagatattaactggt
gcaatcctgaaaaagattattccttacaatctgaggtttttagaaaaaaataatctctct
cttcaggagtttaaatctcttgaaggggagcgcttaaattcctttttaaggaaaggaaag
tttcttgctctcctctttaaagagagggccctaattttacatcttggcctaacggggtcc
ctgcttttaaattccaaaaatagttctccttccccgcataacattttttccttaatcttt
gaccaaggggaacttctttttagagacccccgcaaatttggtaaagtttttctcttatct
atggatgatctctcaacctttttaaatcacttaggagttgatgcccttgagctaactttt
gaggaattaaaaaaaattcttcagggacacaggggtagagttaaaaacttacttcttaac
caaaggattattgcaggtcttggaaacatctatacagatgaacttctttttagagctaaa
ataagcccctttcgccggggaatggagctttctgaggaagaaatatatcggctttatcag
gagatgcaaagccttttggctgaagcaattgccttaagagggtcttccattcgtgattat
gtggatagtgaagggaaaaagggacgctttcaagagaaacacctggtttatggaaaatct
gggaccccttgccctatctgccaaactattttaaagcgaactataattgcccaaagggga
actacttattgtcccaattgtcagaaatga
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