Caldimicrobium thiodismutans: THC_1472
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Entry
THC_1472 CDS
T04224
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
THC_1472
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthi03400
]
THC_1472
DNA repair and recombination proteins [BR:
cthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
THC_1472
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
THC_1472
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
DEAD
UVR
UB2H
AAA_30
nSTAND3
Kinesin
SWI2_SNF2
Slo-like_RCK
Cas3-like_C_2
CSN11_N
AAA_22
Microtub_bd
AAA_16
nSTAND_NTPase5
DUF87
Motif
Other DBs
NCBI-ProteinID:
BAU23837
UniProt:
A0A0U4W424
LinkDB
All DBs
Position
complement(1466945..1468963)
Genome browser
AA seq
672 aa
AA seq
DB search
MEILIPKKELLFRLKAEIEPRGDQPKAISQLVEGVRNGLAHQVLLGVTGSGKTFTMAQVI
SKVQRPTLIIAPNKTLAGQLYNEFKKLFPENAVEYFVSYYDYYQPEAYVPATDTYIEKDA
SINDFIDRLRHSATTSVLTRRDVIVIASVSCIYGLGAPHEYFSKHLYLQKGQQLRRDELL
RALVTMHYQRVETDFTRGTFRVRGDLIEIFPSHEEKKALRLSLFGAEIEDIKVIDPFRGK
VLGKIQSVVIFPASHYVTSEANLFRAIEEIKKELKERVSYLRAQGHYLYAERLEKRTLYD
LEMLEETGYCKGIENYSRYLDGRNPGEPPYTLLDYFPDDFLLFIDESHITIPQLRGMFRG
DRSRKETLVEYGFRLPSALDNRPLTFSEFEERVNQVIYVSATPGDYEVEKAKGRIIEQII
RPTGLLDPKIEVRPSTNQVEDLYFEIKKRVSAGERVLVCTLTKRMAEELTDYYKELGIKA
CYLHSDLKTLERARIIRDLRRGVYDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSER
SLIQTMGRAARNVNGTAILYGETLTPSMKKAIQETERRRRIQEEYNLKHGITPQTIVKSL
EDPLMKMVEADFVDLEKVVEIDEHFTSLEELKEEMERVEKEMKRAAKNYEFERAAILRDR
LFSLRQLALKWA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggagatcttaatacctaagaaggaattactctttagacttaaagctgagattgaaccc
agaggggatcaacccaaagccatctcccagcttgttgaaggagtaaggaatggccttgct
caccaggttcttcttggagttactggctctggaaagacctttaccatggcccaggttata
tctaaggtgcaaagacctacccttatcatcgctcccaacaaaaccttagccggacaactc
tacaatgagtttaaaaaactgtttccggaaaatgcagtggaatacttcgtttcctattat
gattattatcaaccagaagcctatgtccctgcaactgatacctatattgaaaaggatgcc
tctattaatgattttattgataggctaagacattcagccacaacctcagtcctcacccga
agagatgtcatcgttatagccagtgtttcttgtatttatgggcttggagcaccacatgaa
tatttttccaaacatctatatcttcaaaagggacaacaattgagaagagatgaactttta
agggcacttgttaccatgcattatcaaagagtggagacagatttcacccgcggcaccttc
agagtaaggggggatcttattgagatctttccttcccatgaagaaaaaaaggccctcagg
ctatccctatttggtgctgagattgaagatatcaaggttattgaccccttcaggggaaag
gtactgggtaaaatccagagtgtggtaatttttccagccagccactatgttacctcggaa
gccaatctcttccgagctattgaagaaatcaaaaaagaactaaaagaaagagttagttat
ctcagggctcaggggcattacctttatgcagaaagactggaaaaaagaactctctatgac
cttgagatgcttgaagaaactggttattgtaagggcattgaaaactatagtagatactta
gatggaaggaaccccggggagcctccctatacccttctggattacttcccggatgatttt
ctcctctttattgacgaaagccacatcaccataccacaactaaggggaatgtttagagga
gatcgctcaagaaaggaaactctggttgagtatggttttagactcccctctgctcttgat
aaccgccctcttaccttttcagaatttgaagaacgggttaatcaggttatttatgtctca
gctacccctggagattatgaagttgaaaaggctaagggtagaattattgagcagattata
agacctacgggacttctggatcccaaaatagaggtacgaccttccaccaatcaggtagag
gatctttactttgaaataaaaaaaagggtctctgcaggagagagagtccttgtctgcacc
cttactaaaagaatggctgaagagcttactgattactacaaggaattggggatcaaggcc
tgttatctacattcagacttaaagacccttgaaagggctcggattatcagggatcttaga
agaggggtctatgatgtccttataggaatcaatcttttgcgcgagggattggacatacct
gaggtaagccttgtggctatccttgatgcggataaagagggcttccttcgttcagaaaga
agtcttatccagactatgggaagagctgctcgtaatgtaaatggcacagccattctttat
ggggaaactttaactccctccatgaaaaaagctatccaggagactgaaagaaggagaagg
atccaggaagaatataatctaaagcatgggataactcctcaaacaattgtcaaatcctta
gaggatcctcttatgaaaatggttgaggctgattttgtggatcttgaaaaagttgttgag
attgatgaacacttcacaagccttgaagagctaaaagaggagatggaaagagtagaaaag
gagatgaagagagctgccaagaactatgaatttgaaagggcagcaattcttagagataga
ctatttagcttgagacagcttgccctcaaatgggcttaa
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