Caldimicrobium thiodismutans: THC_1479
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Entry
THC_1479 CDS
T04224
Name
(GenBank) ribonuclease
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THC_1479
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthi03019
]
THC_1479
Messenger RNA biogenesis [BR:
cthi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THC_1479
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
KH_1
DivIVA
UPF0172
HrpE
Cas3_HD
KhpA-B_KH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BAU23844
UniProt:
A0A0U5AP27
LinkDB
All DBs
Position
complement(1473852..1475480)
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AA seq
542 aa
AA seq
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MYYILALILGLLFGLALAGLYLYLQKRRERELRVSAEKEAEEILKHAKEKAEVILLSAEE
KSKEIILRGEKEALDRLKKADEEIKSELQKHKNELEKNFQQKLKDLNQKEERLLQKEEHL
ARKETEFTKREELLEKKLSEIENLKNQLENQRIELKEALNRAKEELERISGLSEKEAREI
ILKKIEEEMVEEKARVIMKIENEIREESKKKAQEIIAYATAKAAIPFVTEKTVSVVQLPS
EEMKGRIIGREGRNIRTFEALTGVDLLIDDTPEVVVLSSHDPYRREIARISLERLIADGR
IHPTRIEEVVKQVEEEMEQHLLEVGEKTCFELGIYGIHQELIKLLGKLKFRTSYSQNVLQ
HSIETAIMCAALAGELGLDPKRAKRAALLHDIGKAASYEQEGPHALIGAELARKYGEDED
IVNAIASHHEDIPITTILGILLQVSDALSGARPGARRELLEAYLKRIRELENLASSFEGV
EKAYAIQAGREVRIIVDSRVVSDERAYLLAKEIAQKIEKELTYPGIIKVTVMRETRAIEY
AK
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atgtattacattctcgctttaatccttggtttactttttggccttgccttagcaggtcta
tatctttatttacaaaaaagaagagaaagagaacttcgtgtatcagctgaaaaagaagct
gaagaaatcctgaaacatgccaaagaaaaggctgaggtaattctcctttcagcagaagaa
aaatctaaagagataattctacgaggagaaaaagaggcccttgatcgcctcaaaaaagca
gacgaggaaatcaaaagtgaactccaaaagcacaaaaatgaacttgaaaaaaactttcaa
caaaaattaaaggacctcaatcaaaaagaggaaaggctcctacaaaaggaagaacatctt
gccagaaaggaaacagaattcactaaaagggaagagcttttagaaaagaaactatctgaa
attgaaaatcttaaaaatcaactcgaaaaccagagaatagaacttaaagaggccttaaac
agagctaaagaggaactggagcgaatctccggtctttcagaaaaggaggcccgagaaatc
atccttaaaaagattgaggaggagatggtagaggaaaaagccagggttattatgaagatt
gaaaatgaaatccgagaagaatccaaaaagaaggcgcaggaaatcattgcctatgcaact
gctaaagcagctatcccctttgttactgaaaaaaccgtctctgttgttcaacttccgagt
gaggagatgaaaggaaggataattggtagagaaggcagaaacattcgcacctttgaggcc
ttaaccggagttgaccttttgattgatgatacaccagaggtggttgtcctctcctcgcat
gatccttatagaagagaaattgccagaatctcccttgaaagacttatagcggatggaaga
attcatcctacccgtattgaagaggtggtcaaacaggtagaagaagagatggaacagcat
ctccttgaggtaggggaaaagacctgttttgaattgggaatctatggcattcatcaagaa
ttaatcaaactcttgggcaaacttaaattcagaacaagctatagccagaatgtcctgcag
cattctattgagactgccattatgtgtgcagccttagctggagaacttggtcttgatccc
aaaagggcaaaaagagcggctctcttacatgatattggaaaggcagcaagctatgaacag
gaaggtcctcatgccctgataggagctgagcttgccagaaaatatggagaagatgaagat
atagtcaatgccattgcctctcatcacgaagatattcctattacaactattttgggaata
cttcttcaggtttctgacgccctttctggggcaagacctggtgccagaagggagctcctt
gaggcctatttgaagcgtattcgagaactggagaacttagcatcctcttttgaaggtgtg
gaaaaggcctatgccattcaggctggaagggaagtaagaattattgttgatagtagagtt
gtatccgatgaaagggcctatcttcttgccaaggaaatagctcagaagattgaaaaagaa
cttacctatccaggtatcattaaggtaactgttatgagagaaaccagggccattgagtat
gctaaatag
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