Caldimicrobium thiodismutans: THC_1569
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Entry
THC_1569 CDS
T04224
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03410
Base excision repair
cthi03430
Mismatch repair
cthi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
THC_1569
03430 Mismatch repair
THC_1569
03440 Homologous recombination
THC_1569
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthi03400
]
THC_1569
DNA repair and recombination proteins [BR:
cthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
THC_1569
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
THC_1569
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
THC_1569
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
BAU23933
UniProt:
A0A0U4W4B6
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All DBs
Position
1563061..1564731
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AA seq
556 aa
AA seq
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MKESKLWVQKLPPKEILYNFLREGAFTPLISQILINKGFQEVSSAYTFLFPQITDFANPF
DVPEMSLAVQRIAQALKNKEIIGIYGDSDADGIIGSYVLFDFIREVSGKEPVVIIPDKNL
EGYGFHGKYLSFFKEKGVSLVITVDVGISATETVNAAKAFGLDVIITDHHEVLRKPDCIV
VSGKFTPSHSPFYHLCGAGVVFTLLRALRSYLYEEGFFSQCPPPQLRKYLELVTLATLAD
MVPLWGENRLITYFGFRDLREPTHPSLKALFDHLNFRFPISEEDLHFRVIPRINACGRMG
RPELFFEFLKAGRTGNLDLYLQGLQELHEERQTLELSLWETLEKNLSEEKDSPIYIGIFE
NIPKGILGLLANRVKNKIGKPALIISFDNGVGFGSGRAPEEVNLLEALLPCKDLFLELGG
HKRAFGFQITRENLPRLKGYLKELNLSFESLDYQYVDGETRISELLFEDNLLAFQALPPY
GMSHEPPLLLVKDFEVKEVIILKEKHTKYLLRDGLKELYALYFNQIADEKVKLIVGTPFI
NNFSQRLEIRVEDAKS
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgaaggagtcaaaactctgggttcagaagcttcctcctaaggaaatactttataatttt
ttaagagaaggtgcttttactccgctaatttcacagattcttattaataaaggttttcaa
gaggtaagctcagcttatacctttcttttccctcagataactgactttgctaaccccttt
gatgttcctgagatgagccttgcggttcaaaggattgctcaggctctgaaaaataaagag
ataatcgggatctatggggattcagatgcagatggcattattgggagttatgttttattt
gattttattagagaggtttcaggaaaggagccagtagttattattcccgacaagaattta
gaaggttatggctttcatggtaagtatctgtcttttttcaaggaaaagggggtaagtctt
gttataacagtagatgtggggatatctgcaactgagacagtgaatgccgccaaggctttt
ggtctggatgtaattattactgatcatcatgaggtacttagaaaaccggattgtattgta
gtttctggaaaatttaccccttctcattctcctttttaccacctctgtggggctggggtt
gtttttacccttttgagagccttaagaagttacctatatgaagagggcttcttttctcag
tgtccccctcctcagctcagaaaatatcttgaacttgtcaccttagcaacccttgcggat
atggtgcccctttggggggagaatcggcttattacctattttggttttcgtgatctcagg
gaaccaactcatccttctttgaaagccctttttgatcatttgaattttcgctttcctatc
tctgaagaggatctgcactttagggttattccaaggataaatgcctgtggaagaatggga
aggcctgaacttttctttgagtttctcaaggcgggaagaacaggaaatcttgatctttac
ttacagggtttacaggagcttcacgaggagaggcaaacccttgagctctctctctgggag
accttagaaaagaatctttcagaggaaaaggacagcccaatttatattggcatatttgaa
aatattcctaagggaatccttggccttttggctaaccgagttaaaaataaaatcgggaag
cctgctctaattatcagttttgacaatggagtgggctttggttcaggaagggctcctgag
gaggttaatctccttgaggcccttttgccctgtaaggatctttttttagagcttggggga
cataaaagggcctttggttttcaaatcaccagagaaaatttacccagacttaagggttat
ctgaaagagctgaatttatcctttgaatcattggattaccaatatgtggatggagaaaca
aggatatcagagctactttttgaagacaatcttcttgcctttcaggctctacctccctat
ggtatgtcccacgagccccctctgcttcttgtcaaggactttgaagtgaaagaggtaatc
atcctgaaagagaaacacaccaaatatcttttgagagatggtctaaaggagctctatgcc
ctttattttaatcagatagcagatgaaaaagtaaaattgatagttggcacaccttttatt
aataacttttcccagaggcttgagataagggtggaagatgctaagtcttaa
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