Caldimicrobium thiodismutans: THC_1705
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Entry
THC_1705 CDS
T04224
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
THC_1705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthi03021
]
THC_1705
03400 DNA repair and recombination proteins [BR:
cthi03400
]
THC_1705
Enzymes [BR:
cthi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
THC_1705
Transcription machinery [BR:
cthi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
THC_1705
DNA repair and recombination proteins [BR:
cthi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
THC_1705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
HHH_5
Motif
Other DBs
NCBI-ProteinID:
BAU24065
UniProt:
A0A0U5AT66
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All DBs
Position
1691793..1692773
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AA seq
326 aa
AA seq
DB search
MKKTVELIKPEGIRTHKDSQFPYYGKFIIEPLERGFGQTLGNAFRRILLSSIPGYSITEV
RIVGAPHEFTSLPGVIEDVTDIILNLKGVRFKLEGEGPFNFSLKKSGPAEVKAGDIQVPA
EIGQVVNPEHYIATLSGDGQIEMELKVEKGRGYAPVEYTRNNEVGVILVDGLFSPITRVN
YTVGLARVGKSSDYDSLVLEIWTDGTIDPQSAFLQAARILVEQLMVFLAGEEIFATGKPK
KEPITICNYLNMTVDELELSGRSINCLKSSGINYVGELVQKTESELLKIRSFGRKSLDEI
VEKLRQYNLNLGMKDIKWKPPKVLSE
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaaaccgtggaattaattaagccagaggggattagaactcacaaggatagtcaa
ttcccctattatggaaaatttataattgaacccttagaaaggggatttgggcaaacctta
ggtaatgcctttagaagaatattattatcctctatcccgggttattctataacagaggtc
agaattgttggagctcctcatgagtttaccagtttgccaggagttatagaggatgttaca
gatattattttgaatttaaagggagtgaggtttaagttagaaggggagggcccttttaat
tttagtcttaaaaaaagtggtcctgctgaggtaaaagctggagacattcaagttcctgct
gaaatagggcaggttgtaaatccagaacattatattgctaccctttctggggatgggcag
attgaaatggaattaaaagttgagaagggaaggggatatgcacctgtggaatatactcgt
aataatgaggtaggtgtaatccttgtggatggccttttttctcctattacaagagttaat
tatactgtcggtcttgctcgtgttggtaagagtagtgattacgatagtcttgttcttgaa
atttggacagatggaaccattgacccccagtcagcttttttacaggctgcaagaattttg
gttgagcaattgatggtctttctggcaggagaagagatttttgcaactgggaagcctaag
aaagagcctataactatatgcaattatcttaatatgactgtggatgaacttgagctttct
ggaagatctataaattgcttaaaatcttcgggaataaattatgttggagaactggttcaa
aaaacagaatctgagcttctaaagatcagaagttttggaagaaaatccttagatgagatt
gtagagaaacttcgccagtataatcttaatcttggtatgaaagatattaagtggaagcct
cctaaggttttgtctgaataa
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