Caldimicrobium thiodismutans: THC_1778
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Entry
THC_1778 CDS
T04224
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
cthi
Caldimicrobium thiodismutans
Pathway
cthi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THC_1778
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthi03019
]
THC_1778
03016 Transfer RNA biogenesis [BR:
cthi03016
]
THC_1778
Enzymes [BR:
cthi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
THC_1778
Messenger RNA biogenesis [BR:
cthi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THC_1778
Transfer RNA biogenesis [BR:
cthi03016
]
Prokaryotic type
tRNA degradation factors
THC_1778
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
TRAM
Spt6_S1
DsrD
Motif
Other DBs
NCBI-ProteinID:
BAU24137
UniProt:
A0A0U5B214
LinkDB
All DBs
Position
complement(1766124..1768259)
Genome browser
AA seq
711 aa
AA seq
DB search
MSKKKEKTPFKISKKPIPSEEGIIQLFQKSKKALLLKEIYHLLNVPKAEREQIRNLVKAL
VEKGKLIQIRKRRFALPESLSILKGKLRVHPDGYGFVETEEGKTVFVPQRRLNKALDGDI
VLVRIEKLARKGPEGSIVTVLERPRKNIVGYLVKRHKFFFVEPEDRRLPFEIFIPKKKRL
KAKEGNLVVAQILQSTSEFGVPLGEIIKDLGDPEEITTHCLATVFKFNLPQEFSSDVEKE
LENIPDEVPEEDKIGRIDLRNIPLVTIDGESARDFDDAICVKKNSKGFTLWVAIADVSHY
VKKGSHLDQEAYERGTSVYFPNMVLPMFPKKLSNGLCSLNPLVDRLAMVVELDFTPKGKI
RNRKIYEAVIRSQARLTYTEVKKMLLDKDKKLIKKYQHLYPMLLSAGELAQILREKRMAR
GSLDFDLPEPEIILNLEGKIENIVKRERNLAHMLIEDFMITANEAVAEFLTEKGFPLLYR
VHETPDSNKVKELIEFLPLENTKIKIPEEPTPKFFQKLLDLIKDHPLSYLYNHLLLRSLK
QAKYSPHNVGHFGLASTCYCHFTSPIRRYPDLVVHRALKRALRKKRAPYTEDELEEMGKS
LSIKERTAEEAEREVFKKFQCFFMKDKIGEAFSGIISGVTAFGFFVDLKEYLVSGVVRVV
DLVDDFYVLDEKGISLIGKQKGKVYQIGQTVKVKVKNVDLRRFQINFQLIE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaagaaagaaaaaactccttttaaaatctcaaaaaagcctatcccttctgaa
gaagggataattcaactttttcaaaaatctaaaaaggccctcttacttaaagaaatctat
catctacttaatgttccaaaagctgaaagagaacaaataagaaatttagtaaaagctctg
gtagagaaaggcaaacttattcagattcgtaaaagacgctttgccttaccagagagctta
tctatacttaaaggcaagctcagggttcaccccgatggatacggttttgttgaaacagaa
gagggcaaaacggtttttgttccccagaggcgtttaaataaggcccttgatggtgatata
gtcttagtaagaattgaaaaacttgctcgtaaaggacctgaaggaagtattgtcactgtt
ttagaaagaccgagaaaaaacattgtgggctatcttgttaaaagacataaatttttcttt
gtagagccagaagaccgtcgtcttccctttgagatctttatccccaaaaaaaagcgattg
aaagctaaagagggaaatcttgttgttgcccaaatcttgcaatctacctctgaatttgga
gtcccactgggagaaataatcaaggatcttggggacccagaagaaattaccacccattgc
cttgcaactgtttttaaatttaaccttcctcaagaatttagctcagatgtagaaaaagag
cttgaaaatattccagatgaagttcctgaagaggacaaaattgggcggattgatcttaga
aatatccctcttgtaactattgatggagaaagtgcccgggactttgatgatgccatttgc
gttaagaaaaactcaaagggctttactctctgggtagccattgctgatgtttctcattat
gttaaaaaggggtctcatcttgaccaagaggcctatgaaagaggaacaagtgtttacttt
cccaatatggtgcttcccatgtttcctaaaaaactctctaatggactctgcagtctgaac
cctttagtggatagattagccatggtggttgagcttgacttcactcccaaaggaaagatc
aggaaccgcaaaatctatgaagctgttatccgctcccaggccagacttacctatacagaa
gtaaaaaaaatgcttcttgataaagataaaaagctcattaaaaagtatcaacacctttac
cccatgctcctttcagcaggagagcttgctcagatccttcgggagaaaagaatggccaga
ggaagtcttgactttgatttaccagaaccagagattatccttaatcttgagggaaagatt
gaaaatatcgtaaagcgagaaagaaaccttgcccatatgttaattgaagactttatgatc
accgcaaatgaagcagtagccgaattccttacagaaaagggatttcccctactctatcgt
gttcacgaaactccagattcaaataaagtaaaggaattaattgagtttcttccccttgaa
aacacaaaaattaaaatccctgaagagcctacgccaaagttttttcagaaacttctggat
cttattaaagaccatccactgagttatctctataatcatttactcctgaggtctctcaaa
caagccaaatattcacctcataatgtgggacattttggccttgcttcaacctgctactgc
cactttacctcccctattcgtagatatcctgatcttgttgttcacagggccttaaaaagg
gctttaagaaaaaaaagagccccttacaccgaagatgaacttgaggagatgggaaaatcc
ttatccataaaagaacggactgctgaagaggctgaaagagaggtcttcaaaaaattccag
tgcttttttatgaaggataaaattggagaggccttttctggtataatctcaggagtaaca
gcctttggattttttgttgatctaaaagaatatttggtaagtggtgtggtaagagtcgtt
gatctcgtggatgacttctatgtgcttgatgaaaagggaataagccttatcggaaaacaa
aaaggaaaggtttaccaaattggccagacagtaaaagtaaaagttaagaatgtagatcta
cgaagatttcaaatcaactttcaattaatagaataa
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