Carboxydocella thermautotrophica: CFE_0329
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Entry
CFE_0329 CDS
T05389
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cthm
Carboxydocella thermautotrophica
Pathway
cthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFE_0329
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthm03021
]
CFE_0329
03019 Messenger RNA biogenesis [BR:
cthm03019
]
CFE_0329
Transcription machinery [BR:
cthm03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
CFE_0329
Messenger RNA biogenesis [BR:
cthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFE_0329
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
ATPase_2
AAA_25
AAA
Spore_III_AA
S1CSD-TOTE-2
AAA_24
Mor
AAA_30
AAA_28
Motif
Other DBs
NCBI-ProteinID:
AVX19528
UniProt:
A0A2R4MXF5
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All DBs
Position
324981..326237
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AA seq
418 aa
AA seq
DB search
MTTQLNMQELEAMTLQELYKVARELEIPGYRQLRKKELVFEILKARTEKDGLLFAQGILD
ILPDGYGFLRPFAYTPSSDDIYVSPSQIRRFDLRTGDQVAGQVRPPKENERFFALLRVES
VNGFPPESSPERLPFDALTPLYPDERLTLETTSDKLALRLIDLLAPIGKGQRGLIVAPPK
AGKTTLLKEIANAITANHPEVHLLVLLIDERPEEVTDMERSVKGEVVASTFDEPPEHHVK
VAEMVLERAKRLVEHKEDVVILLDSITRLARAYNVVVPPSGRTLSGGVDPTALHKPKRFF
GAARNLEEGGSLTILATALVETGSRMDDVIFEEFKGTGNMELILDRKLAERRIFPAIDVQ
RSGTRKEELLLSKEELEFVWNLRRTSSGVPSAEVVEKMREWLKKSSCNKELVEMIKWG
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacgcaactgaatatgcaggagctggaggccatgactctgcaggagctgtacaag
gtggcccgggaactggagattcccggataccggcagctgcgcaaaaaagagctggtcttt
gagattttgaaagcccgtaccgaaaaggatgggctgctgttcgcccagggaattctggat
atcctgcctgatggctacggttttttgcgtcccttcgcttatacccccagttccgatgat
atctatgtctccccatcccagattcgccgttttgatttgcgcaccggtgaccaggtggcg
ggccaggtccggccgcccaaggaaaatgaacgcttttttgcccttttacgggtagaatcg
gttaatggctttccgccggaatcctcaccggaacgcttgcctttcgatgccctaacaccc
ttataccctgatgagaggctgactttagaaaccacttccgataaactggctttacgcctg
attgacctgctggcccccatcggtaagggacagcggggattgatcgtggctcctcctaag
gcagggaaaactacgttgctgaaagaaatcgctaatgccattactgccaatcatccggaa
gtgcatttgctggtgttactcattgatgagcggccggaggaagtcactgatatggagcgc
agtgtcaaaggggaagtggtggcttccacctttgatgaaccgccggaacatcatgtcaag
gtggcagaaatggtgttagaaagagcgaaacggctggtggaacacaaagaagatgtagtg
attttgctggattccattacccggctggcccgggcctataacgtggtagttccgcccagt
ggccgtaccctttccggcggtgtagatcccacagctttgcataaacccaaacgctttttt
ggggcagcccgcaacctggaggagggaggcagtctcaccattctggctacggcgctggtg
gaaacgggcagccgtatggatgatgtgatttttgaggaattcaaaggcacaggcaatatg
gagctgattctggatcgcaaactggcggaacgccggattttcccggccattgatgtccag
cgctccggaacccgcaaggaagagctgctgctgagcaaggaggagctggagtttgtctgg
aacctgcgccggacttccagcggggtgccttccgcagaagtggtggaaaaaatgcgggaa
tggctgaaaaagtccagctgcaataaggaactggtggagatgatcaaatggggataa
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