Carboxydocella thermautotrophica: CFE_0687
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Entry
CFE_0687 CDS
T05389
Name
(GenBank) DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
cthm
Carboxydocella thermautotrophica
Pathway
cthm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
cthm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CFE_0687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthm03400
]
CFE_0687
Enzymes [BR:
cthm01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CFE_0687
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CFE_0687
DNA repair and recombination proteins [BR:
cthm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CFE_0687
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Auto_anti-p27
Zn_ribbon_8
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
AVX19886
UniProt:
A0A2R4MYF4
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All DBs
Position
689269..690096
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AA seq
275 aa
AA seq
DB search
MPELPEVETVRRSLSPLVCGQEIRAVEVLHPGVIKGVLNARAFVTNLMGRRFVEIRRRGK
YLLFLLDDGQVLLIHLRMTGRLVLAEAEAPLLPHTHLIWHLSSGQQLRFSDVRRFGEVRL
CRQEQLEIEPGLARLGPEPLEQEWTVATLAAAVRGKKAPIKNILLNQEIVAGLGNIYADE
ALYRAGIKPDRPGQSLSQEEIERLWLAVRQVLAEGIENRGTSFSDYVDGLGQKGQMQTRL
KVYGRSGSPCHSCGTILEKMRLAGRSTVYCPVCQQ
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgccggaattgccggaagtggagacagtgcgacgcagcctttcccctcttgtgtgtggc
caggaaatcagagcagtagaggtattgcatccgggggtaatcaaaggggtgctgaatgcc
cgggccttcgttacaaacctgatgggacggcgttttgtggaaatccggcggcggggcaaa
tatctgctttttttgctggatgatgggcaggtactgctgatccatttgcgcatgaccggc
cgactggtgctggcagaggcggaggcgcctttgttgccccatacccatctgatctggcac
ctgtccagcggtcaacagctgcgtttcagtgatgtgcgccgctttggtgaggtgcggctt
tgccgccaggagcaactggagatagagccagggttggcccggctgggaccagagcctctg
gagcaggaatggacagtggcaacactggcggcagctgtacgggggaaaaaagctcccatc
aagaatattttgctgaaccaggaaatagtggccgggctgggcaatatttatgccgatgag
gctctctaccgggcaggtatcaagccggatcggcctggtcaatctttgagccaggaggag
atcgagcgcctctggctggcagtacgtcaggttctggccgaagggatagaaaaccggggc
acttctttcagtgattatgtggatgggctgggccagaaaggccagatgcagacaaggctg
aaggtctatggtcgcagcggttcaccctgccacagctgtggcactatcctggagaaaatg
cgcctggcgggcaggagcaccgtttactgtcctgtctgccagcagtaa
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