Carboxydocella thermautotrophica: CFE_1535
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Entry
CFE_1535 CDS
T05389
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
cthm
Carboxydocella thermautotrophica
Pathway
cthm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CFE_1535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthm03019
]
CFE_1535
03016 Transfer RNA biogenesis [BR:
cthm03016
]
CFE_1535
Enzymes [BR:
cthm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
CFE_1535
Messenger RNA biogenesis [BR:
cthm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
CFE_1535
Transfer RNA biogenesis [BR:
cthm03016
]
Prokaryotic type
tRNA degradation factors
CFE_1535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
KH_2
TrkA_C
Sec3_C-term
OB_RRP5_4th
Thioredoxin_6
zf-C2H2_ZNF462_11
Motif
Other DBs
NCBI-ProteinID:
AVX20713
UniProt:
A0A2R4N0W1
LinkDB
All DBs
Position
complement(1505016..1507109)
Genome browser
AA seq
697 aa
AA seq
DB search
MERTFQLEVGGRTMSFLTGKLAKQANGAVMAAYGDTRVLVTATCSKEPREGIDFFPLTVD
YEERLYAAGKIPGGFIKREGRPGEKAILAARLIDRPIRPLFPEGFRNDVHIVATVMSVDQ
DHDPRVVALCGASVALTISDIPFNGPIGAVIVGRVDGKLIINPNLEQSEKSDMHIVVAGT
KDAVMMVEAAANEVPEDEILEAIMFAHEEIKKIVEFQIQVQTELAVVKREIPLAQPDPEM
DQAVRAFIAEEINQAVRIFDKQQRQDTLEELRKKVLEHFQEQYPEREKELEKVFHNILKE
TVRQMIITEGIRPDGRKLDEIRPIWCEVGVLPRTHGSAIFTRGQTQVLTVTTLGAIGDEQ
ILDDLGVDESKRYMHHYNFPPYSTGEARPLRAPSRREIGHGALAERALEPMIPDEKVFPY
TIRLVSEVLESNGSSSMASVCGSTLSLMDAGVPIKRPVSGVAMGLVKEGDIVRVLTDIQG
MEDALGDMDFKVAGTEIGVTAIQMDIKIAGIDRQILKMALEQARQGRLYILQKMLETLPA
PRKELSPWAPRLIFLTIHPDKIRTVIGPGGKTIKKIIDETGVKIDIEDDGRVFIYAIDQS
AGRKAQEMIEELTEEVEVGKTYLGKVVRIVEFGAFVEVLPGKEGLVHISQLSEQRVNKVE
DVVSVGDQIPVKVIKIDDLGRINLSRKQAIQEEKQKG
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggaacgaaccttccagttagaggtaggcggcaggaccatgtcttttttgaccgggaaa
ctggcaaaacaggccaatggtgctgtgatggcagcatatggcgatactcgggtcctggtt
acggctacctgttccaaggaaccccgggaagggattgatttctttcctttgacagtagat
tatgaagaaagattatatgccgctggtaagatcccaggcggtttcatcaaacgggaaggc
aggccgggggaaaaagccattctggctgcccgtttgattgacagacccatacgtccctta
tttcctgaaggttttcgcaatgatgtacatatagtagctactgtaatgtccgttgaccag
gatcatgacccgcgggttgtggctttgtgtggtgcatccgttgctctaaccatttctgac
ataccttttaacggacctattggggctgttatcgttggccgcgttgatgggaagcttatc
attaatcctaatctagaacaatctgaaaagagcgacatgcacatcgtcgtagcgggaacc
aaagatgcagtaatgatggtggaagctgctgccaatgaggttccggaagatgaaattctg
gaagccatcatgtttgcccatgaagaaatcaagaagatagtagaatttcagattcaggtt
caaactgaactggcagtggttaaacgggaaattccattggcccagccagatcctgaaatg
gaccaggcagtcagggcatttattgccgaagagatcaaccaggcagtgcgaatttttgac
aaacagcaacggcaggatacattagaagaactgaggaaaaaagtgctagaacatttccag
gaacaatatccggaacgggaaaaagagctggaaaaagtatttcataacatcttgaaagaa
actgtacggcagatgattatcactgaaggaatccgtcctgatggccggaaactggatgaa
attcgtcctatctggtgtgaagtcggagttttgcccagaacccatggttctgctatcttt
accagaggacagacccaggtactgaccgttactactctgggggcgattggggatgaacag
attctggatgacctgggagtagacgaatcaaaacgctatatgcatcattacaattttccg
ccttatagcacaggagaagccagaccgctccgggctccatcccgacgggaaatcggtcac
ggcgctctggcagaaagagctctcgaacctatgatacctgatgaaaaggtcttcccctat
actatccgcctggtttccgaagtcctggaatccaatggttccagttccatggccagcgtt
tgcggcagcaccttgtccttaatggatgcaggtgtacctatcaagcgccccgtttccggt
gtagctatgggtctggttaaggaaggagatattgtccgggtcctgaccgatatccagggt
atggaagacgctctgggggatatggatttcaaagttgcaggtactgaaatcggggtaaca
gccattcaaatggatatcaagatcgctgggattgaccggcagatcctcaagatggctctg
gaacaggcccgacagggacggctgtatattcttcagaagatgctggagactttaccggca
ccccgtaaggagttgtcaccatgggctccgcgcctgattttcctgaccattcatccggat
aaaatcaggacggtgattggccctggtggtaaaaccatcaagaaaatcattgatgaaacc
ggagtaaagattgatattgaagatgatggccgagtcttcatatatgcaattgaccaatct
gctggtagaaaagcacaggaaatgatcgaggaactcaccgaggaggtggaagtaggcaaa
acttatctcggtaaagtagttcggattgtagaatttggcgcctttgtcgaagttctgccc
ggtaaggaaggcttagtgcatatcagtcagctttccgaacagagagtcaataaagtagaa
gatgtagtcagtgttggcgatcagattcctgttaaggtaatcaagattgatgatttgggg
cggatcaatctttcccgcaagcaagctatccaggaagaaaagcaaaagggttaa
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