Thermochaetoides thermophila: CTHT_0001850
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Entry
CTHT_0001850 CDS
T03100
Name
(RefSeq) ATP dependent RNA helicase (dob1)-like protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTHT_0001850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0001850
03041 Spliceosome [BR:
cthr03041
]
CTHT_0001850
03009 Ribosome biogenesis [BR:
cthr03009
]
CTHT_0001850
03016 Transfer RNA biogenesis [BR:
cthr03016
]
CTHT_0001850
Enzymes [BR:
cthr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTHT_0001850
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
CTHT_0001850
Spliceosome [BR:
cthr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
CTHT_0001850
Complex C
U4/U6.U5 tri-SnRNP related factors
CTHT_0001850
Ribosome biogenesis [BR:
cthr03009
]
Eukaryotic type
Pre-60S particles
Helicases
CTHT_0001850
Transfer RNA biogenesis [BR:
cthr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
CTHT_0001850
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
DUF6985
Motif
Other DBs
NCBI-GeneID:
18254223
NCBI-ProteinID:
XP_006690734
UniProt:
G0RZ64
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
1097 aa
AA seq
DB search
MDDLFAVFEEQPRAPKKRKADDTPDVEMTDGANGGANGDANGDANGAAAPAKEEAVANGN
EEIPSTDEPTTPANGDDSNNSFLKRPKMQDEAEPIITDTFQTAESREVTAAQGFAPTVES
EPLVLSHNIQHQVALPPDLDYEYIPLSEHKPPAEPARTYPFKLDPFQAMSVASIERDESV
LVSAHTSAGKTVVAEYAIAQCLKRNQRVIYTSPIKALSNQKFRDFQAEFGDVGLMTGDVT
INPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDEIHYMRDKTRGVVWEETIILLPDKV
RYVFLSATIPNAYQFAEWIAKIHRQACHVVYTDFRPTPLQNYFFPAGGKGIYLIVDEKGN
FKEHNFNQAMSAIEQSKGADSADPNARMKGRGKNKRIHTGEATDGKSDIAKIIKLIIKKN
FQPVIVFNFSKRECEQLALATSSLKFNSPQEEELVNSVFGNAIGQLSEDDRQLPQISNIL
PLLRKGIGVHHSGLLPILKETIEILFQEGLIKVLFATETFSIGLNMPARTVVFSQVTKWD
GKTRRPLTPSEYIQMAGRAGRRGLDDRGIVIMMVDEKLEPEVARSVVVGQQDRLNSAFHL
GYNMILNLLRIEAISPEYMLERCFFQFQTAHSIPQLERELAALQQERDSMIIPDEALIKD
YHSIREQIDQYTKDMVLVMQHPTNCVKYINPGRLMHVVTSDGTDFGWGVIINFYERRPER
NNPNPGWSPQESYVVEVLLRLSSDSGSVDSKLKDNQCIPAGIAPVTQKNDPGRWEVVPCL
LSCMHGLSQIKLHVPDKKSGGSMDDPETRRRVGKSLLEVQRRFEDGIPHMDPIENMHIRD
VEFKKLLRKIEVLESRLVANPLHNSPLLAELWEKLQYKLSLQDKIKEKKKEISRAHSIAQ
MDELKSRKRVLRRLGFINDAEVVQMKARVACEISSTEGHELLLAELLFNRFFNELSPEVI
AAVLSVFIFDEKVETTAALKEDLAKPYREIQAQARIIAKVSAESKLDVNEDEYVNSLKWQ
LMETVLAWANGQPFSEVCKMSNAYEGSLIRLFRRLEELLRQMAEAAKVMGSDELREKFET
SLAKIRRDIVSFNSLYL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggatgacctctttgccgtcttcgaggagcagcctcgagcgccaaaaaagcgcaaggct
gacgacactcccgacgtcgaaatgaccgacggcgccaacggtggtgccaatggtgatgcc
aatggtgatgccaatggcgccgctgcgcccgccaaagaagaggccgtcgcgaacggcaac
gaagagatcccctcgactgacgaaccgaccacgcccgcaaacggcgatgattcgaataac
agcttcttgaagcgccccaaaatgcaagatgaggccgagcccatcatcaccgataccttc
cagacggccgagtcgcgcgaggtcaccgcggctcagggcttcgcgccaaccgttgagtct
gaaccgctcgtgctgtcgcacaacatccagcatcaggttgccctaccgccagatctcgac
tacgagtacataccgctttccgagcacaagccgcccgccgagccggcgcgcacgtatccc
ttcaagcttgatcccttccaggccatgtcggtcgcgtccatcgagcgtgacgagagtgta
cttgtttctgcccatacctctgccggcaagacagtcgttgccgagtatgccatcgcccag
tgcctgaagcgcaaccagcgcgtcatctacacctcgcctatcaaggctcttagcaaccaa
aagttccgcgatttccaggccgagttcggcgatgttggtctcatgacgggtgatgttacc
atcaaccctacggcgagttgtttggtcatgactaccgaaattctgcgatccatgctgtac
cgcggttccgaaatcatgcgcgaagtcgcgtgggtcatctttgatgagattcactatatg
cgtgacaaaacccgcggtgtggtctgggaagagaccatcatcctgctgcccgacaaggtt
cgctatgtctttctgtcggccacgattccgaacgcctaccagtttgccgagtggattgcc
aaaattcatcgccaggcctgccacgtcgtttataccgacttccggccgacgcccctgcag
aactacttcttccccgccggcggcaaaggtatttacttgattgtcgacgagaagggcaat
tttaaggagcacaacttcaaccaagccatgtcggccatcgagcagagcaagggcgctgac
tcggccgaccccaacgcgcgcatgaagggccgcggcaagaacaagcgcatccacacgggc
gaggccacggatggaaagtcagacattgccaagattatcaagctgatcatcaagaagaac
ttccagcccgttatcgtcttcaacttcagcaagcgcgaatgcgagcagttggcgctggcc
acctccagcttaaagttcaactcgccccaagaggaggagcttgtcaattcggtcttcggt
aacgccatcgggcagctgtcggaagatgaccgccaactaccgcagatttctaacatcctg
ccgctgttacgcaagggcatcggtgtccaccactccggtctgctgcccattctcaaggag
accatcgagatcttgttccaggagggccttattaaggtgctctttgcgaccgagactttc
tcgattggtctcaacatgcccgcgcgtaccgtcgtgttcagccaggttaccaagtgggac
ggcaagacgcgtcgtccgctgaccccctccgagtacattcagatggccggtcgtgccggt
cgtcgtggtctcgatgaccgcggtattgtcatcatgatggtcgacgagaagctcgagccc
gaggtggcgcgcagcgtggttgtcggccagcaggaccgcctcaactcggccttccacttg
ggctacaacatgatcctcaacctgctgcgtatcgaggccatctcgcccgagtacatgctc
gagcgctgcttcttccagttccagacggcccacagcatcccccagctagagcgcgagctg
gctgcccttcaacaggaacgcgactctatgatcatccccgacgaggcgctcatcaaggac
taccactcgattcgcgagcagatcgaccagtacaccaaggacatggtgctggtcatgcag
cacccgaccaactgcgtcaagtatatcaatcccggccgactcatgcacgtcgtcacgtcg
gacggcaccgacttcggctggggcgtcatcatcaacttctacgagcgcaggcccgagcgg
aataaccccaatcccggctggtcgccccaggagagctacgtcgtcgaggtactcctccgc
ctatcctccgacagcggctccgtcgacagcaagctcaaggacaaccaatgcatcccggcc
ggcattgcccctgtcacccagaaaaacgaccccggccgctgggaggtcgtgccctgtctg
ctctcctgcatgcacggtctcagccagatcaagctgcacgtgccggacaagaagtcaggc
gggtcgatggacgaccccgaaacccgccgccgcgtgggcaagtccctgctggaagtgcag
cgccgcttcgaggacggcatcccgcacatggacccgatcgagaacatgcacatccgggat
gttgagtttaagaagctgctgcgtaagatcgaggtgctcgagtcgcgccttgtggccaac
ccgctgcacaactcgcctctcttagccgagctgtgggagaagctgcagtacaagctctcc
ctgcaggacaagatcaaggagaagaagaaggagatctcgcgtgcgcactccatcgcgcag
atggacgagctcaagtcgcgcaagcgggtgctgcgccggctggggttcatcaatgacgct
gaggtggtgcagatgaaggctagggtggcgtgcgagatttcgtcgaccgaggggcacgag
ctgttgttggcggagttgttgttcaaccggttctttaacgagctctcgccggaggtgatt
gccgctgtgttgagcgtgtttatctttgatgagaaagttgagacgacggccgcgctgaag
gaggatctcgccaagccgtaccgcgagatccaggcgcaggcaaggattattgccaaggtt
agcgccgagagcaagctggatgtcaatgaggacgagtacgtgaatagcctcaagtggcag
ctaatggagacggtactggcgtgggcgaatgggcagccattttcggaagtttgtaaaatg
tccaacgcctacgagggctcgctcatccgtctcttccgccgtttggaggagctgctgcgc
cagatggccgaggcggccaaggtcatgggcagcgacgagctgcgcgagaagttcgagacc
agcctcgccaagatccgccgcgacattgtctcgttcaacagcttgtatctgtaa
DBGET
integrated database retrieval system
