Thermochaetoides thermophila: CTHT_0005780
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Entry
CTHT_0005780 CDS
T03100
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0005780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cthr03041
]
CTHT_0005780
03009 Ribosome biogenesis [BR:
cthr03009
]
CTHT_0005780
Enzymes [BR:
cthr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTHT_0005780
Spliceosome [BR:
cthr03041
]
Complex A
U2 snRNP components
U2 related factors
CTHT_0005780
Complex B
CTHT_0005780
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CTHT_0005780
Ribosome biogenesis [BR:
cthr03009
]
Eukaryotic type
90S particles
Helicases
CTHT_0005780
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
DEAD
HA2_C
Helicase_C
AAA_22
HA2_N
AAA_19
SRP54
ResIII
T2SSE
Flavi_DEAD
AAA_23
AAA_30
AAA_7
AAA
nSTAND3
ABC_tran
Motif
Other DBs
NCBI-GeneID:
18254616
NCBI-ProteinID:
XP_006691112
UniProt:
G0RY84
Structure
PDB
LinkDB
All DBs
Position
Unknown
AA seq
764 aa
AA seq
DB search
MADITKGTKRLSGEAEGSQDSKRVKTNGDKMDAKNPYLAHLEEKPEADFESLLDKLERRN
TTAKQAEAVEDSDINPWTGQRHSERYFKILKARRKLPVNKQRQEFLDLYHNNQILVFVGE
TGSGKTTQIPQYVLYDELPHQTGKLIACTQPRRVAAMSVAQRVADELDVKLGEEVGYSIR
FENKTSSKTLLKYMTDGQLLREAMHDRDMSRYSCIILDEAHERTLATDILMALLKQLSER
RKDLKIIVMSATLDAQKFQSYFFNAPLLAVPGRTHPVEIFYTPEAERDYVEAAIRTVLQI
HACEPEGDILLFLTGEEEIEDACRRISLEVDEMIRESDAGPMSVYPLYGTLPPHQQQRIF
EKAPQPFRPGGRPGRKCIVATNIAETSLTIDGIVYVVDPGFSKQKIYNPRTRVESLLVSP
ISKASAQQRAGRAGRTRPGKCFRLYTEEAFKKELIEQTYPEILRSNLSNTVLELKKLGVE
DLVHFDLMDPPAPETMMRALEELNYLACLDDDGELTPLGNLASEFPLDPALAVMLISSPE
FYCSNEILSITSLLSVPQIWVRPANARKRADEMKAQFAHPDGDHLTLLNAYHAYKGAEAR
GEDMKKWCHEHFLSYRHLSSADNVRAQLKKIMETHGIELVSTPFHDKNYYTNIRRALLAG
FFMQVAMRESSNSKVYKTVKDEQLVLIHPSTTVTTPYEWVVYNEFVLTTKQYVRTVTNIR
PEWLLEIAPVYYDLSTFQKGEIKNALTRVAEKIRRQQAMKASKA
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggcagatatcacgaagggcacgaagcgattgagtggtgaggccgaggggagccaggat
tcgaagcgggtgaagacgaacggcgacaagatggacgcgaagaatccgtacctggctcat
ctcgaggagaaacccgaggccgacttcgagtcgctcctcgacaagctcgagcgccgcaac
accaccgcgaagcaggccgaggccgttgaggactccgacatcaatccttggaccggtcag
cggcactcggagcgctacttcaagattctgaaggctcgtcgcaagctacccgtcaacaag
cagcgccaggagttcctcgacctctaccacaacaaccagatcctcgtctttgtcggtgag
accggttccggtaaaacgacccagatccctcagtatgtgctctacgacgagctgccgcac
cagaccggcaagctcattgcctgcacacagcccaggcgagtggccgctatgtcggtcgcc
cagcgtgtcgccgacgagctggacgtgaagctgggcgaggaagtcggttacagcatccgt
ttcgagaacaagacgagctccaagaccctactcaagtacatgaccgatggtcagctgctg
cgagaggcgatgcacgaccgcgacatgtcgcgctacagctgcatcattcttgacgaagcc
cacgagcgcactctcgccaccgatattttgatggctctgctcaagcaactgtcggagagg
aggaaagatcttaagattatcgtcatgtccgctaccctcgacgctcaaaagttccagtcc
tacttcttcaacgctccgctcctcgctgtgccgggtcgtacacaccccgtcgagatcttc
tatacccctgaggctgagagggactacgtggaggctgccatccggacggtgctgcagatc
catgcatgcgagcctgagggtgatatcctgctgtttttgacgggtgaggaggagattgag
gatgcctgccgccggattagcttggaggtggacgagatgattcgggagtctgacgcaggg
cccatgtcagtttaccctctgtacggcacactaccaccccatcagcaacaacgcatcttc
gagaaggctccccagcccttccgccctggcggccggccgggcaggaaatgcatcgtcgca
accaatatcgccgaaacatctctcaccattgacggcattgtctacgtcgtggaccctggt
ttcagcaagcaaaagatttataatccccgcacaagggttgagtcgctgctcgtgtctccc
atctccaaggcctcagcgcagcaacgtgctggtcgtgccggtcgtacacggccaggcaag
tgcttccgtctgtacacggaagaggctttcaagaaggagctcatcgagcagacatacccc
gagatcctgcggtccaatttgtccaacaccgtcctcgagctgaaaaagctcggcgtcgag
gacttggtacacttcgacctgatggatccgccggctcccgagaccatgatgcgtgcactc
gaggaactcaactatctggcctgcttggacgacgacggcgagctaacgccgttgggcaac
ctggcgtccgagttccccctagacccggcgctggccgtgatgctgatctcgtcgcccgag
ttctactgctcgaacgagatcctgtccatcacgtccctcctctccgtcccacaaatctgg
gtgcgccccgcgaacgcgcgcaagcgcgccgacgagatgaaggcgcagtttgcgcacccc
gatggtgaccacctgacgttgctgaacgcgtaccacgcgtataagggtgccgaggcgcgg
ggcgaggacatgaagaagtggtgccacgagcatttcctatcataccgtcacctttcgagc
gcggacaacgtgcgggcgcagctgaaaaagatcatggagacgcacggcatcgagctggtc
agcacgcccttccacgacaagaactactacaccaacatccggcgcgccctgctcgccggc
ttcttcatgcaagtcgccatgcgcgagtcgagcaacagcaaggtctacaagaccgtcaag
gatgagcagctcgtcttgatccacccgagtaccaccgttaccacgccgtacgagtgggtt
gtctataatgagtttgtcttgacgactaagcagtacgtgcgcacggtgacgaacattcgg
ccggagtggcttcttgaaatcgcccctgtctactacgacctcagcacgttccagaagggc
gagatcaagaatgccctgacgcgcgtggctgagaagatccgccgccagcaggccatgaag
gccagcaaggcgtga
DBGET
integrated database retrieval system
