Thermochaetoides thermophila: CTHT_0006330
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Entry
CTHT_0006330 CDS
T03100
Name
(RefSeq) putative pre-mRNA splicing protein
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0006330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cthr03041
]
CTHT_0006330
Spliceosome [BR:
cthr03041
]
Complex B
Other components
Prp19-related factors
CTHT_0006330
Complex C
CTHT_0006330
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
STL11_N
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_3
RRM_YTH1
Motif
Other DBs
NCBI-GeneID:
18254671
NCBI-ProteinID:
XP_006691166
UniProt:
G0RYD8
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
395 aa
AA seq
DB search
MPPQIKQDLNRAGWESTDFPSVCENCLPENPYVKMLKEDYGAECKLCTRPFTVFSWAGDG
RAHGRKKRTNICLTCARLKNACQCCIMDLQFGLPIVIRDKALELIAPGPQSEINREYFAQ
NNERAIEEGRAGVEEYEKTDEKARELLRRLANSKPYFRKGRELDSEGNPVAGGSGSTVGG
NAVVGAGLGGAGPIRTRDTRAAAAAGARTGGAGSARRGPGAALPPPGPKDWLPPADKSIM
SLFITGIEDDLPEWKIRDFFKQYGKIKSLVVSHMTHCAFVNYETREGAEKAATELKGRAV
IAGCPLRIRWSIPRPIGTMNKEERAEMLRDGRSAFPEANRKSAQKAIEAAGAQGGAAGGA
AGGAAAEAQQDDLADLAIAAPPGAADVQYASLAGN
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgccgccgcaaatcaaacaagacctcaaccgcgctggctgggagtcgaccgacttccct
tccgtctgcgagaactgcctgcccgagaacccgtatgtcaagatgctgaaagaggactac
ggtgccgagtgcaagctgtgtacgcggcccttcaccgtgttctcctgggcgggcgacggg
cgcgcccacggtcgcaagaagcgtaccaacatctgcctgacgtgcgcccgccttaagaac
gcctgccagtgctgcatcatggatctgcagttcggccttcccatcgtcatccgcgacaag
gccctcgagttgatcgcccccggcccccagagcgagattaatcgcgagtattttgcgcag
aataatgagcgcgctattgaggagggccgagctggtgtggaggaatatgagaaaacagat
gagaaagctagggagctgctgcgccggttggccaacagcaagccttacttccgtaagggc
agggagctggactcggagggcaaccccgtcgcgggcggcagtggtagcacggttggcggc
aatgcggttgtcggtgccgggctgggcggcgcaggaccgatccggacgcgcgatacacga
gcggcggctgcagcgggtgcgaggactggaggtgcgggcagtgcgcgccgcggccccggc
gccgctcttccccctccgggccctaaggactggctgccgccggcggacaagagcattatg
tcactgttcattacgggcatcgaggacgacctgccggagtggaagatccgcgactttttt
aagcagtacggcaagattaagtcgcttgtcgtttcacacatgacacactgcgcgtttgtc
aactacgagacgcgtgagggcgctgagaaggctgcgacggagctcaaggggcgtgctgtc
attgctggttgcccgctgcgcatccgctggagcatcccccggccgattggcaccatgaat
aaggaggagcgcgcggagatgctgcgcgatggccggtctgctttccccgaggcaaatcgc
aagagcgcacaaaaggccatcgaagctgctggtgcgcagggcggtgctgccggcggtgct
gctggcggtgctgctgccgaggcccagcaggacgacctcgcggaccttgccatcgctgcc
cctcctggtgctgccgacgtgcagtatgccagtctggcgggcaactag
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