Thermochaetoides thermophila: CTHT_0009560
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Entry
CTHT_0009560 CDS
T03100
Name
(RefSeq) hypothetical protein
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0009560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cthr03041
]
CTHT_0009560
Enzymes [BR:
cthr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTHT_0009560
Spliceosome [BR:
cthr03041
]
Complex A
U2 snRNP components
U2 related factors
CTHT_0009560
Complex B
CTHT_0009560
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
Motif
Other DBs
NCBI-GeneID:
18254994
NCBI-ProteinID:
XP_006691480
UniProt:
G0S0C8
LinkDB
All DBs
Position
Unknown
AA seq
1198 aa
AA seq
DB search
MARPRDSRSPSPAGSNAARRRKDDERRDRDRDRDRDRDRDRDRDRDRDRDRDRDRDGRRR
SRSPDRWHRDRDRDRDYGRDPRDRDSYRWRDRSLDRRDDDYYRSSRRDGGINRERHRSRD
RARSPDRRGRDYRGRRDDSRDRRGRRDDSVDSASRRGDDARPRSSKDTVTAKDEARVASP
SPSPGVGPKLTCSQDSQPAKSTPTQALSEAEKKAERLRKLQAMKEKHALKEAKEADVTSG
STRQLLAEMDQKVGTATSATASAASPSSAPSNVSTPFAGKFDPKAIAKNARATRAQSPAK
LGDVPLGVPGAKSAATISETGVKEAGGALPANRAISAFGFAKANDAQKSSSKRKLDMDDE
EVIKRKLVKLPDFALENADNTPYADGDADEDGEQDLELLMARNNEEDMAEAHRILQERRD
ERIAQESMAMDIDTEPVNGKAKDEPTAMDVEEEELDPLDAFMANLEQTNTAEDRMVKRSQ
AQAEKKAFEPEAYFSDDDYGYEAENADPSAILAMAAKKKKKDIPTIDYSKIELNPVRKNF
WVEPQELAQMTEEEVAELRMELDGIKVSGKNVPKPVQKWSQCGLTRPILDTIEKLGFEKP
TPIQMQALPVIMSGRDVIGVAKTGSGKTMAFVLPMLRHIKDQDPVSGDDGPIGLILTPTR
ELCTQIYTDLLPFTKVLKLRAVAAYGGNAIKDQIAELKRGAEIIVATPGRMIDLLAANSG
RVTNLKRATYIVLDEADRMFDMGFEPQVMKIFANVRPDRQTILFSATMPRIIDALTKKVL
RNPVEITVGGRSVVAPEITQIVEVIEENKKFVRLLELLGELYANDDDVRALIFVERQEKA
DDLLRELLRRGYGCMSIHGGKDQEDRNSTISDFKKGVCPILIATSVAARGLDVKQLKLVV
NYDAPNHLEDYVHRAGRTGRAGNTGTAVTFITEEQENCASCIAKALEQSGQPVPERVDAM
RKSWREKVKAGKVKEASGFGGKGLERLDKDREAARLRERKSHKADGEDDDFGDDKPEDAV
KDRATAAIEAAASAIVARDAPRADIKGDIKTPIVTGKGGALDKAASAISEINARLARAGQ
LRAGQPIDNKGPDAGAFHATLEINDFPQKARWAVTNRTNVAKILEATGTSITTKGTYYPP
GKEPAPGGEPKLYILIEGETEIVVSKALAELTRLLREATLAAAEIESRAPVSGRYTIT
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atggctcggcccagagactcgcgctcaccatctcctgcaggaagcaatgctgcacgacga
cggaaagatgatgagcgacgcgaccgggaccgggaccgggaccgggaccgagatcgggat
cgggatcgggatcgggatcgggatcgtgaccgtgaccgcgaccgcgacggtcgtcgccgc
tcacgcagtccggatcgttggcaccgcgatcgcgaccgtgaccgcgactacgggcgcgat
ccccgggaccgcgattcctatcgttggagagaccgttccctagaccgccgagacgatgat
tattatcgaagttcccgtcgtgatggcggtattaatcgtgagcgccatcgatcgcgcgat
agagcgaggtcaccagatcgccgaggccgagactaccgtggccgccgggatgattcacgc
gaccggaggggtcgtcgagatgattcggtagattccgcctctcggcgaggcgatgatgct
cgtccccggagctccaaagacaccgtcacggccaaagatgaggcacgtgtcgcttctccg
tctcccagcccaggcgttggacctaaactaacctgttcccaggactctcagccagctaag
tctacaccaacccaagccctgtccgaggctgagaaaaaggctgagcgactacgcaaactc
caagccatgaaagagaagcatgcccttaaagaggccaaggaggccgatgtcacctctgga
agcactaggcaactgcttgctgagatggaccagaaagttggtacagctactagcgccaca
gcatccgcggcaagcccctcatcggcaccatcgaatgtttccactcctttcgctggaaaa
tttgacccaaaggcgattgcaaaaaacgccagagcgacccgcgcccagtcccccgcaaag
ttgggcgatgtgcccttgggcgtccctggcgcgaaatccgctgcaaccatatctgaaaca
ggtgtaaaggaagctggcggcgcgctgcccgccaacagagccattagcgcattcggattt
gccaaggcaaatgacgctcagaagtcctcgtcaaagcgtaagctcgacatggatgacgag
gaggttatcaagcgcaagctcgttaaactgcccgactttgctctggagaatgctgataac
actccatatgctgatggcgacgcagatgaggacggtgaacaggacttagaactgctcatg
gcaaggaataatgaagaggatatggctgaggctcaccgcattcttcaagagagacgtgac
gaacgcatcgctcaggaaagcatggcaatggatatcgacacggagccggtcaatggcaag
gccaaggatgagcccactgctatggatgttgaggaagaggaactcgatcctctggatgcg
tttatggccaatctggagcaaacgaatactgccgaagaccgcatggtcaagcgcagccaa
gcccaagccgagaagaaagccttcgaaccagaagcatatttcagcgacgacgactacggt
tatgaagccgagaatgccgacccgtctgctatactcgccatggcagccaagaaaaagaag
aaggatatcccgactattgactacagcaagatcgaactcaaccctgttaggaagaacttc
tgggttgaaccacaagagcttgcccagatgaccgaggaggaggtggccgagctgcgcatg
gagctggacggcattaaggtctccgggaagaacgtgccaaagcctgtgcagaagtggtct
caatgcggcctgactcgccccattctcgacacgatcgagaagctcgggtttgagaagccc
acgcctatccagatgcaagccttgcctgtcatcatgtctggccgcgatgtgattggtgtc
gcaaaaactggatcaggcaagaccatggcgtttgttcttcccatgctccgccatatcaaa
gatcaggatccagtgagtggtgatgacggcccgattggtttgatcttgacccccaccaga
gagctctgcacacagatctacacggacttgctccctttcaccaaggtgttgaaacttcgt
gccgtggctgcttatggtggaaatgccatcaaggaccaaatagcggagctgaagcgtggc
gccgaaatcatcgttgccactccgggacgcatgatagatcttcttgccgccaactcgggc
cgtgtgacgaaccttaagcgcgccacatacatcgtgctggacgaggccgaccgcatgttc
gacatggggttcgaaccccaagtcatgaagatctttgccaacgtccgacccgacaggcag
actattctgttctctgcaacgatgcccaggatcatcgacgcgctcacaaagaaggttctg
cggaatcccgtagagattacggtcggcgggcgcagtgttgtagctcccgagatcacacag
attgtcgaggtcatcgaggagaataagaaatttgtgcggctgctcgagctccttggagaa
ctgtatgccaacgacgacgatgttcgcgccctaatctttgtcgagcggcaagagaaggct
gacgacctgctgcgcgagcttctgcggcgtggttacggttgcatgtcgatccacggcggc
aaagaccaggaagatcgcaactcaaccatctcggacttcaagaaaggcgtttgtccgatt
ctcattgccacgtcagttgctgcgcgcggtctcgatgttaagcagttgaagctggtcgtc
aattatgacgctcccaaccaccttgaggattatgtgcaccgcgcgggccgcactggacgt
gccggtaacacaggtacagccgttacctttatcaccgaggaacaggagaattgcgcttcg
tgcatcgcgaaagcgctcgagcagagtggacagccggtgcctgagcgtgtggacgccatg
cgcaagtcctggcgtgagaaggtcaaggctggcaaggttaaagaagcgtcaggctttggt
ggcaagggtctggagcgtctcgacaaggatcgcgaggcagcccgtctgcgcgaacgcaag
tcgcacaaagctgatggtgaggatgacgactttggcgacgataagccggaggatgccgtt
aaggacagggcgaccgcggctatcgaggctgccgcttcggccattgttgctcgtgacgca
ccgcgcgcagatatcaagggcgacatcaagacgccaatcgtcactggcaaaggtggcgct
ttagacaaggcggcgtcggccatcagcgagatcaacgctcgcttggcccgcgctgggcaa
ctgcgcgctggacagccgatcgacaacaaaggacccgatgccggcgcgttccacgctacg
ctcgaaattaacgacttcccacaaaaggcacgctgggcggtcaccaaccgcaccaacgtg
gccaagatcctcgaggccacgggcacctctatcacgaccaagggcacgtactacccgcca
ggcaaagagcccgctcccggcggcgaacccaagctgtacatcctcatcgagggcgagacc
gagattgtggtcagcaaggcactggcggaactcactcgcctgctcagggaagccacattg
gctgcggcagagatcgaaagtcgcgcgccggtcagcggcaggtacacaatcacatga
DBGET
integrated database retrieval system
