KEGG   Thermochaetoides thermophila: CTHT_0010010
Entry
CTHT_0010010      CDS       T03100                                 
Name
(RefSeq) WD40 repeat-containing protein
  KO
K12880  THO complex subunit 3
Organism
cthr  Thermochaetoides thermophila
Pathway
cthr03013  Nucleocytoplasmic transport
cthr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cthr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CTHT_0010010
  09122 Translation
   03013 Nucleocytoplasmic transport
    CTHT_0010010
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthr03019]
    CTHT_0010010
   03041 Spliceosome [BR:cthr03041]
    CTHT_0010010
Messenger RNA biogenesis [BR:cthr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     CTHT_0010010
Spliceosome [BR:cthr03041]
 Complex C
  Other components
   EJC/TREX
    CTHT_0010010
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CTHT_0010010
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 Beta-prop_IFT122_1st WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_EML_2 Beta-prop_WDR3_2nd WDR55 ANAPC4_WD40 WD40_Gbeta Beta-prop_TEP1_2nd Beta-prop_Aladin EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_RIG_2nd Beta-prop_EIPR1 Beta-prop_WDR75_1st DSE1_N Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_CAF1B_HIR1 Beta-prop_EML Beta-prop_SCAP Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_TEP1_C Beta-prop_NOL10_N CFAP251_N Beta-prop_IFT140_1st Beta-prop_WDR35_TULP_N Beta-prop_VPS8 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 WD40_RFWD3 Tricorn_2nd TP_0598_N DUF1513 Beta-prop_DCAF4 Beta-prop_WDR41
Other DBs
NCBI-GeneID: 18255039
NCBI-ProteinID: XP_006691524
UniProt: G0S0H2
LinkDB
Position
Unknown
AA seq 339 aa
MAPPVRSRYSRIPKEKFSAYFGPLKSQPYNDSTSRGGSHHSLRTLAWNPLGTLIATGASD
KTLRVWNPEKPNVRFSTELKGHTSGIEKIAFNPVKDAELCSVSNDGVVKFWDVRTKACVN
EVKGLGNTHALAWAPDGSSLLVGNRAGELFQLLPTKSSVVSSHQQPVETNQMAFAWTGDK
VFLPTNEGRVRILSYPGLEPVLHVNHAVKPDESTEFTLKGHTAPCLTVELSPTGRYLATG
GADSIIALFDTKDWICQRTVSCLVGPVKSISFTFDGSYVVGGCEEGSGLEVTHTETGEHV
HTFKTAGPCEAVAWAPTRYCLAYSDLGVLRIIGLDADRK
NT seq 1020 nt   +upstreamnt  +downstreamnt
atggcgcccccagttcggtctcggtatagccgaattccgaaggagaagttttcagcctat
tttggtccgctcaagagccaaccatacaatgactctacctcgaggggaggatcacatcac
agcctacgcacccttgcctggaatcctttaggaacccttatcgcaacaggggcttctgac
aagactcttcgtgtttggaatcccgagaagccaaatgttcgcttctcaacggagctcaaa
ggacacacatcaggcatcgagaaaattgctttcaacccagtcaaggatgcagagctctgt
agcgtcagtaatgatggcgttgtcaagttctgggatgtccgaacgaaagcatgtgtgaat
gaggtaaagggactaggcaatacccacgcgcttgcttgggcccctgacggctcatcattg
ctcgtaggcaacagggctggcgaacttttccagctcttaccaaccaagtcttccgtagtc
tcctctcaccagcagcccgttgaaacaaaccaaatggctttcgcttggactggagacaaa
gtctttctgccgacaaatgagggcagggttcgcatactatcctatcctgggctggagccc
gtcctccatgtcaaccatgccgtcaagccagacgagtccacagagttcacattaaagggg
cataccgccccttgtctgacagttgaactctcgcctaccgggcggtacctcgcgacagga
ggagccgattctattattgccctgtttgataccaaagattggatctgccagcgaaccgtc
tcgtgcctagtaggccccgtcaagagcataagtttcacctttgatggcagctacgtcgtt
ggtggctgcgaggaaggttctggcttggaggtaacccatacagagacaggtgaacacgtc
catacattcaaaaccgctggcccgtgtgaagcagttgcctgggcgcctaccagatactgc
cttgcctacagcgatctaggcgttcttcgcatcattggcctcgacgccgatcgcaaatga

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