Thermochaetoides thermophila: CTHT_0011670
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Entry
CTHT_0011670 CDS
T03100
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03018
RNA degradation
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0011670
09123 Folding, sorting and degradation
03018 RNA degradation
CTHT_0011670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0011670
03041 Spliceosome [BR:
cthr03041
]
CTHT_0011670
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CTHT_0011670
mRNA degradation factors
5'-3' decay
Lsm complex
CTHT_0011670
Spliceosome [BR:
cthr03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
CTHT_0011670
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
18255205
NCBI-ProteinID:
XP_006691686
UniProt:
G0S0Y4
LinkDB
All DBs
Position
Unknown
AA seq
148 aa
AA seq
DB search
MADRGHRGGRGNFRGGRGGSGGGGGGYSSRGGSSAAGSAAGMPGASGNAQNQDKERPKKE
NILDLKKYMDKRITVKFNGGREATGVLKGYDALMNLVLDDVEELLRDDEGNEMTRPLGLV
VVRGTLLVFVSPVDGSEVIANPFVQAED
NT seq
447 nt
NT seq
+upstream
nt +downstream
nt
atggcagaccgaggccaccgcggcggccgcggcaactttaggggaggccgtggtggtagt
ggtggcggcggcggcggatatagcagccggggcggcagcagcgcggcaggctccgctgcc
ggaatgccgggcgccagcggtaatgcgcagaaccaggacaaggagcgccctaagaaggaa
aatatcctggatctgaagaagtacatggataagcggatcactgttaaattcaatggtggt
cgggaagctactggtgttttgaagggttatgatgcgttgatgaatttggtcttggacgac
gttgaagaattacttagagacgatgagggcaatgaaatgactcgccctcttggtttagtc
gttgttcgcggaactcttcttgtgtttgtcagcccagttgacgggagcgaggtgatagca
aatccgttcgtccaggctgaagattga
DBGET
integrated database retrieval system