KEGG   Thermochaetoides thermophila: CTHT_0012740
Entry
CTHT_0012740      CDS       T03100                                 
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
cthr  Thermochaetoides thermophila
Pathway
cthr03013  Nucleocytoplasmic transport
cthr03015  mRNA surveillance pathway
cthr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cthr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CTHT_0012740
  09122 Translation
   03013 Nucleocytoplasmic transport
    CTHT_0012740
   03015 mRNA surveillance pathway
    CTHT_0012740
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthr03019]
    CTHT_0012740
   03041 Spliceosome [BR:cthr03041]
    CTHT_0012740
Enzymes [BR:cthr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CTHT_0012740
Messenger RNA biogenesis [BR:cthr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CTHT_0012740
Spliceosome [BR:cthr03041]
 Complex C
  Other components
   EJC/TREX
    CTHT_0012740
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CTHT_0012740
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 DUF4844 CMS1
Other DBs
NCBI-GeneID: 18255312
NCBI-ProteinID: XP_006691791
UniProt: G0S189
LinkDB
Position
Unknown
AA seq 434 aa
MSAEEDLIDYSDDELNNESTGPSANGKKADAAASTQNVDKKGSYVGIHSTGFRDFLLKPE
LLRAIADCGFEHPSEVQQTCIPQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVPGECS
VLVMCHTRELAFQIRNEYNRFSKYMPEIKTGVFYGGTPIQKDAEILKNKDTHPHIIVGTP
GRLNALVREKYLRLGSVRMFVLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSD
EIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIALEEREKNRKLNELLDELQFNQVIIF
VKSTLRATELDKLLRECNFPSIAVHSGISQEERIRRYKEFKEFNKRICVATDVFGRGIDI
ERINLAINYDMPADADSYLHRVGRAGRFGTKGLAISFVSSDQDREVLKAIEKRFEVALPE
FPKEGVDASTYMAS
NT seq 1305 nt   +upstreamnt  +downstreamnt
atgtcggccgaagaggatctgatcgactactcggatgacgagctcaacaacgagtccacc
ggcccctccgccaatggcaagaaggccgacgcggctgcgtccacacagaatgtcgataag
aagggctcctatgtcggcatccactcgacgggtttccgtgactttctcttgaagcccgag
cttcttcgcgccattgccgattgcggtttcgaacatccgtcggaggttcagcagacatgc
attcctcaagctatgctcggcggcgacattatctgccaggcgaagtctggtctcggcaag
acggccgtcttcgttctgaccaccctgcagcaagtcgagcctgtgcctggcgagtgctct
gtcctcgtcatgtgccacactcgcgaactggcattccaaatccgcaacgagtacaaccgc
ttcagcaagtacatgccagagatcaagactggcgtcttctacggcggaactccgatccag
aaggatgccgagatcctcaagaacaaggacacccacccacacattatcgtcggcactccc
ggccgtctgaacgcccttgttcgggagaagtatttgcgccttggaagcgtccggatgttt
gtcctcgatgaatgcgacaaaatgctcgaccagatcgacatgcgtcgcgatgtccaggag
attttccgtgctactcctcaacagaagcaggtcatgatgttctcggccactctgtccgat
gagatcaagccgatctgcaggaagttcatgcagaacccgaccgagcactacgtcgatgag
gataccaagttgacgctgcacggtctgcagcagtactacattgctctcgaggagcgcgag
aagaatcggaagctcaacgagctgctcgatgagctccagttcaaccaggtcatcattttt
gtcaagagcactctccgtgctactgagctcgacaagcttctgcgcgagtgcaacttcccc
tcgattgcagtccactccggtatcagccaggaggagcgcattcgccggtataaggagttc
aaggagttcaacaaacgcatctgcgtcgctacggacgtgtttggtcgtggcatcgacatt
gagcgcatcaacctcgccattaactatgacatgcccgcggatgccgactcataccttcac
cgtgtcggccgtgctggtcgtttcggtaccaagggtctcgctatttcattcgttagctcc
gaccaggatcgggaggtgctcaaggctatcgagaagcggttcgaagtggctcttcctgag
ttccctaaggaaggcgtcgacgcctccacctacatggcttcgtaa

DBGET integrated database retrieval system