Thermochaetoides thermophila: CTHT_0016610
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Entry
CTHT_0016610 CDS
T03100
Name
(RefSeq) DNA mismatch repair protein msh2-like protein
KO
K08735
DNA mismatch repair protein MSH2
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
CTHT_0016610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cthr03400
]
CTHT_0016610
DNA repair and recombination proteins [BR:
cthr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
CTHT_0016610
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
AAA_27
Motif
Other DBs
NCBI-GeneID:
18255699
NCBI-ProteinID:
XP_006692163
UniProt:
G0S2B1
LinkDB
All DBs
Position
Unknown
AA seq
940 aa
AA seq
DB search
MSSRPELKVDDEHGFIRFFRSLPPVGEDTIRIFDRNDWYTAHGEDANFIARTVYKTTSVV
RMLGKNDHTGLPSVTMTVTVFRQFLREALYKLGKRIEIWTSANGRMNWKLAKQASPGNLQ
DVEDDLGGYGESAPIILAVKISAKASEARTVGVCFADATARELGVSEFLDNDLYSNFESL
LIQLGVKECLIQIDKADKDKKDPELAKLRQIIDSCNIAISERPSSDFATKDIEQDLARLL
KDERSATMLPQTDLKLAMGSAAALIKYLGVLHDPANFGQFRLYQHDLAQFMKLDAAALKA
LNLMPGPRDGSKTMSLFGLLNHCKTPLGSRLLAQWLKQPLMDKDEIEKRQQLVEAFANDT
ELRQTMQEEHLRAVPDLYRLAMRFQRKKANLEDVVRVYQVVIRLPSLLGTLEGVMDEAYR
DPLDEAYTNKLRELSDSLAKFQDMVETTVDLDALDNHEFIIKPEFDDSLRIIRKRLDKLR
SDMEREFAEAARDLGQERDKKIFLENHKVHGWCMRLTRTEAGCIRNKPKYMECSTQKNGV
YFTTKTLQAYRREFDQLNLNYNRTQSGLVSEVVSVAASYVPVLERLAGVLAHLDVIVSFA
HCAVHAPTSYVRPKIHPRGEGQTILKEARHPCLEVQDDVQFITNDVELTRDKSSFLIITG
PNMGGKSTYIRQIGVIALMAQVGSFVPCSYAELTIFDSILARVGASDSQLKGVSTFMAEM
LETANILKSATRESLIIIDELGRGTSTYDGFGLAWAISEHIVQEIGCFALFATHFHELTA
LADQHPQVRNLHVTAHISGTSTANGSGPRKADTKREVTLLYKVEPGVCDQSFGIHVAELV
RFPDKVVRMAKRKADELEDFTTNHEEGADSNVGGVAAEGYSKQDVEEGSALLKDLLVRWK
DEVQSAGGMNKAEMVKRLREMVAKDEKLLANPFFQSIKTL
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccagaccggaattaaaggtggacgatgaacatggattcatccgctttttcagg
tcacttcctcccgtgggagaagataccatccgtattttcgaccgaaacgactggtacaca
gcccatggcgaagatgccaacttcatcgctcggacggtctacaagacaacctcagttgtc
aggatgctagggaagaatgatcacactggccttccatccgttacaatgaccgttaccgtc
ttccgacagttccttcgcgaagcgctgtataagcttggaaaacgcatcgagatttggacg
agcgcgaacggacgtatgaactggaaattggccaagcaggcgtctcctggaaatctgcaa
gacgtcgaagatgacctcggtggatatggagagtctgccccgatcatcctggcagtcaag
atctctgccaaggccagcgaggctcgtaccgtgggagtttgctttgctgatgccacagct
cgagaacttggtgttagcgagttccttgacaatgacctctactccaacttcgagtccctt
ttgattcagctcggagtcaaggagtgtctgatccagatagacaaggccgataaggacaag
aaggacccggaactggctaagctcaggcaaattatcgacagctgcaacatcgccatctct
gaacgcccatcatccgactttgccaccaaggacattgagcaggatttggcaaggctgctg
aaagatgagaggtctgcgacaatgctgccgcagaccgacctcaagctggccatgggttcg
gcagccgccctgatcaagtacctcggtgtcctccatgaccccgccaactttggccagttc
cggctctaccagcatgacttggcacagttcatgaagctcgatgcggcagctctcaaggcc
ctgaacctaatgccagggccaagagacggttccaagactatgagcttatttggcctactg
aatcactgcaagacacctttgggaagtcgcctgttggcgcagtggctgaagcagccccta
atggacaaggacgaaattgagaagcggcagcagctggtggaggcattcgccaacgatact
gagctccggcagacgatgcaagaagagcatctgagggcggtaccggacctttatcgctta
gccatgcggttccagcgcaaaaaggcgaacttggaagacgttgtcagggtatatcaagtg
gtcatccgcttgcccagcttgctgggtaccctcgagggtgtcatggatgaggcctaccgc
gatcccttggacgaagcttacaccaacaagctccgtgagctttctgatagcctggccaag
ttccaagacatggtcgagaccactgtcgacctagacgctctcgataaccacgagttcatc
attaagcccgagttcgatgacagcctacgcatcattcgtaagcggcttgataagctgcgc
tccgatatggagagagagtttgccgaggcagcgagagacctgggccaggaacgggacaag
aagatcttcctcgaaaaccacaaagttcatggctggtgcatgcgcttgacccggacagaa
gcgggctgcatccggaacaagcccaagtacatggagtgctcgacgcagaagaacggcgtc
tacttcaccaccaagaccctccaagcataccgccgcgagttcgaccaactcaacctaaac
tacaaccgcacccagagcgggctcgtcagcgaagttgttagcgtcgccgcctcctacgtg
cccgtcctcgagcgtctcgctggagtcctcgcccacctagacgtcatcgtttccttcgcg
cactgtgccgtccacgcaccaacctcctacgttcgccctaaaatccatccccgtggcgaa
ggtcaaaccatcctcaaagaagcccgtcatccctgcctcgaagtccaagacgacgtacag
ttcatcacaaatgacgtcgagctcacccgcgacaaatcctccttcctcatcatcacgggc
cccaacatgggcggcaaatcgacctacatccgacaaatcggcgtgatcgccctgatggct
caagtcgggagctttgtgccctgcagctacgccgagctgaccatcttcgacagcatcttg
gcgcgcgtaggtgccagcgacagccagttgaagggtgtgtccacgttcatggccgagatg
ctggagacagccaacatcctcaagtcggcgacacgcgaaagcctgatcatcatcgacgag
ctcggccggggtacatccacctacgacgggtttggtctggcgtgggctatctcggagcac
atagtgcaagagatcggctgtttcgcgctgtttgcaactcacttccatgagctaactgcc
cttgccgaccaacaccctcaggtccgcaacctccatgttacagcgcatatcagtggcacg
agcaccgccaacggctccggccctagaaaagccgacactaaacgcgaagtgaccctcctg
tacaaagtcgagcccggcgtatgcgatcagtcctttggcatccacgtcgccgaactcgtc
cgcttccccgacaaggtagtccgcatggcgaagcgcaaggccgacgagctggaggatttc
acaaccaatcacgaggaaggcgccgacagcaacgttggcggggtggctgccgaggggtac
agcaagcaggacgtggaggaggggagcgccctgctgaaggacttgcttgtgcgatggaag
gacgaggtccagtctgctggtggcatgaataaggctgagatggtgaagcggttgagggaa
atggttgccaaggatgagaagttgttggccaatcccttttttcagagcattaagacgttg
tga
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