Thermochaetoides thermophila: CTHT_0017020
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Entry
CTHT_0017020 CDS
T03100
Name
(RefSeq) putative cleavage and polyadenylation protein
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CTHT_0017020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0017020
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CTHT_0017020
U7-dependent histone pre-mRNA processing factors
CTHT_0017020
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
18255740
NCBI-ProteinID:
XP_006692204
UniProt:
G0S2F2
LinkDB
All DBs
Position
Unknown
AA seq
998 aa
AA seq
DB search
MFSFTPLLGARSESTASQSLLELDGGVKVLIDVGWDESFDPSLLRELEKHVPTLSLILLT
HATINHLGAYAHCCKHFPLFTRIPVYATRPVIDLGRTLTQDLYASNPRAATTIPKSSLAE
TAFAFPQAAGGAELPSSLLLQPPTPDEIIRYFSLIQPLKYSQPHQPLPSPFSPPLNGLTI
TAYNSGHSLGGTIWHIQHGLESIVYAVDWNQARENVFAGAAWLGGGHGAAVGTEVIEPLR
KPTALVCSSRTPDAALPRARRDEQLLESVKLCIARGGTVLIPVDSSARVLELAYLLEHAW
RTEVAKENEVFKGTKLYLAGRSVGSTMRNARSMLEWMDDSIVREFEAVAGGARTTNGGAN
ASGGNKAKEAGPFDFKYLRLLERKAQIERVLQQATSPPEGESPKGTVILATDTSLDWGFS
KDVLKAIASDARNLVILTEKPNLANPDRPSIARMLWDWWRERRDGVAVEQTASGDTFEQV
YGGGRELSVPESTRHPLEGSELTVYQQWLATQRQLQATLRSGGAAGALEASADVVDDASE
TTTESEESETEQQGKALNVSTTIGQASRKKVVLTDEDLGITILLKKKGVYDFDVRNKKGR
ERMFPTVLRRKRVDEFGELIRPEDYLRAEEREDEADAAAAANTQDASKPEHNLGKKRKFD
DVAAATANTTSPAKRPARRGSIDEGDGALSGPASSDGQPGDELDELEDDEEAVLGPAKLV
VAQQTVQVHLRIAFVDFSGLHDKRSLNMLIPLIQPRKLILVGGTEEETLSLAEDCRNLLG
AAPSQPEGAEAMPTKTVSADIFTPLLNETINASVDTNAWSVLLTDSFVKHLKWQTVRGLG
IVTVTGLLLPPGVEPLSQPAQQQQPQEPDSKRAKLDLSLPVPLTTPETANRSLPTLDILP
PQLAGATVRSGGVQPLHVGDLRLADLRRGLLAAGHRAEFRGEGTLLVDGSVVVRKTGAGR
VEVESIGLGVNQEEKGGWGTLLAVRRRIYEGLAVVGAA
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgttttccttcacacccctcctcggcgcccgctccgagtcgaccgcctcacagtcgctg
cttgagctagacggcggcgtcaaggtcctaattgatgtcggctgggacgagtcctttgac
ccttccctcctgcgcgaactcgagaaacacgtcccgaccctctcgctgatcctgctcacg
cacgcgaccatcaaccacctcggcgcctacgcccactgctgcaaacacttcccgctgttc
acacgcatcccggtgtatgcgacccgaccggtgatcgatctgggtcgcactctgacccag
gacctgtacgcgtcgaacccccgcgctgctacgaccatccctaagtcctccctcgccgaa
accgcgtttgccttcccccaagccgccggcggtgctgagttgccctcctccctcctgctc
cagcccccaacccccgacgaaatcatccgttacttctccctcatccagcccctcaaatat
tcccagccacaccaaccccttccctcccccttctcaccccctctcaatgggctcaccatc
accgcctacaactcgggccactccctcggcggcacaatctggcacatccagcatggactc
gagtccatcgtctacgccgtcgactggaaccaagcgcgcgagaatgtcttcgcgggcgca
gcctggctcggtggcgggcatggtgcggcggtaggtactgaggtgatcgagccgctgagg
aaaccgaccgcgctcgtgtgtagcagtcgcacgcctgatgcggcgctgcctagggcacgg
agggacgagcagctgctcgagagtgtgaagttgtgtattgcgcggggtgggacggtgttg
atccctgtggattcgagtgcgcgcgtgctggagctggcgtacctactagagcatgcctgg
aggacggaggttgcgaaggagaatgaggtgttcaaggggacgaaattgtatcttgctggg
cgcagcgtggggagcacgatgcgcaatgcgaggagtatgctcgagtggatggatgatagc
attgtgcgggagtttgaggctgttgccggcggcgcaaggacgacaaatggcggggctaat
gccagcggagggaataaggctaaggaagcgggcccgttcgactttaagtatctccgcctg
ctcgagcgcaaggcccagattgagcgtgtcctgcagcaggcgacatccccgccggaaggg
gagtcgcccaagggcactgtcatcttggctacggatacgagcttggattggggcttctcc
aaggacgtgttgaaggctatcgcctccgacgcacgcaacctggtcatcctaaccgagaaa
cccaacctcgcgaaccccgaccgcccttccatcgcccgtatgctatgggactggtggcgc
gagcggcgcgacggcgttgcggtcgaacagaccgcctccggcgacaccttcgagcaagtg
tatggtggcgggcgggagctcagcgtgcccgaatccacgcgtcacccgctcgagggctcc
gagctgacagtctaccagcagtggttagcgacacagcgccagctacaggcaacgctgcgg
tccggtggcgcggctggggcgctagaggcgtcggctgacgtggttgacgacgcgtcggag
acaacgaccgaatcagaggagtcagagacagagcagcagggcaaggcgttgaacgtgtcg
acgacgattggacaggcgagcaggaagaaggttgtgttgacggatgaggatttggggatt
acgatattgctcaagaagaagggcgtttacgactttgatgtgaggaataagaaaggcagg
gagaggatgtttcctacggtgctgaggagaaagagggttgatgagtttggcgagttgatc
aggccggaggattatctgcgtgctgaggagagggaagatgaggctgatgctgcggcggct
gcgaatacccaggatgcttcgaagccggagcacaacctcggcaagaagcgcaagttcgac
gatgtcgctgccgcgacggctaacaccacctccccggccaaacgacctgctcgtcggggc
tccattgacgagggagatggcgccctctctggcccggcttcatcagatggccagcccggc
gacgagctcgatgagctggaagatgacgaagaagccgtcctcggcccagccaagctggtt
gttgctcaacagacagtccaagtacacctgcgcatcgcctttgtcgacttcagcggcttg
cacgacaagcgcagcctgaacatgctcattccactcatccaaccccgcaagctcatcctc
gtaggcggcaccgaagaagaaaccctctccctagccgaagactgccgcaatctcctgggc
gcggctccctctcagcccgaaggagcagaggccatgccgaccaagacggtctccgccgat
atctttactcccctcctaaacgaaacgatcaacgcctccgtcgacaccaacgcctggtcc
gtcctgctaaccgactccttcgtcaaacacctcaaatggcagactgttcgcgggctcggc
atcgtcaccgtcacgggtcttttgctgccgcccggcgttgagccgctctcccaacccgcg
cagcaacaacaacctcaagaaccggactcgaaacgcgccaagttggatttatctctccct
gtgccgttgactacacccgaaacagccaaccgctctttacctacgttagacatcctccct
ccccaactcgcgggagctacagtccgcagcggcggcgtgcagccgctgcatgtaggcgat
ctgagattagcagatttgcgcagggggttgctggctgcggggcatagagctgagtttaga
ggggagggcacgctgcttgtggacgggagcgttgtagtcaggaagacgggagctggacgg
gtggaggtggagagtatcggattaggtgtgaatcaggaagagaaagggggttgggggacg
ttgctggcggttaggaggaggatttatgaagggttggctgttgttggggcggcgtag
DBGET
integrated database retrieval system
