Thermochaetoides thermophila: CTHT_0018030
Help
Entry
CTHT_0018030 CDS
T03100
Name
(RefSeq) hypothetical protein
KO
K15172
transcription elongation factor SPT5
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CTHT_0018030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cthr03021
]
CTHT_0018030
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0018030
Transcription machinery [BR:
cthr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CTHT_0018030
RNA polymerase I system
CTHT_0018030
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
CTHT_0018030
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spt5-NGN
Spt5_N
KOWx_SPT5
KOW5_SPT5
KOW4_SPT5
CTD
KOW2_Spt5
KOW1_SPT5
KOW
DUF3912
RNase_P-MRP_p29
Motif
Other DBs
NCBI-GeneID:
18255841
NCBI-ProteinID:
XP_006692301
UniProt:
G0S2P9
LinkDB
All DBs
Position
Unknown
AA seq
1062 aa
AA seq
DB search
MASNAPFHFAGDSESDDEPFNPAPADMSDEENEVEDDSRNKKGRRSPADDGDEDENEEQA
EEGAEEEDAEGDGVAEDDEEEEGGEEEEEEEEDEDEEDEDVQQHRRRRKRRKDLGAAFLD
IEAEVEDEEEAEDEDREAEGIDDFIDIAHPDDLEEVSRLHDERQHRALDRQRELEASLDA
EKQAEILRERYGKRAASRGYGDMKVVPKRLLLPSVDDPSIWAVRCKEGKEREVVFNIMRR
IEERMGTPNALPITAAFERGGPNSVMKGYIYVEARRQTDVLIALDGMLNVYPRTKMMLVE
IKDMPDLLRVTKTPTLEPGAWVRLKRPAKHAGDLAQVLDVTENGLEARVRFIPRLDYGVR
DDASSNLTPDGKRKRPGMPAPRPPQRLFSEAEARKRNPRYLSGNPQTNTWTYMGEEFENG
FQVKDIKIQWLETKDVNPTLEEVTKFASGGEDGTENLDLKALYTSLKDSNNVTYVPGDVI
EVYEGEQAGVIGKAISVQGDIVTLRVTEGELAGQTLEVPNKGLRKRFQLGDHVKVIGGSR
FRDEVGMVVNITDDRVTLLSDQTNTEITVFSKDLREASDIGGQGSLGQYSLLDLVQLDPT
TVGVIVKVDRESMVVLDQNGDTRQVMPSQIANKLPKRRTAVAADRNGSEIRLDDVVREYG
GQQRQGKIIHIYRSYVFLHSNATTENAGVFVTRAGNVMTVAAKGGRVNANAGPDLSAMNP
ALKRNPNGTNNNMPPPKQSLGPDRALNQHVSIRRGVYKGMMGIVKDTTETHARVELHSKN
KVVTVPKADLIFRDKITGKPIDIYSRGGRPAPSSSGRPGDYSGGRTLMGASGGERTPAWG
SSKSTARTPAWGRPETSGSRTPAWGDGSRTVNPYDGSRTAYGGATAYGGSRTPAWSSSAK
TPAHDGFGHGSKTPAWSASASSSHDPWGSKTPAYGVSAPTPGASGSANSASDPWGYTPGA
SGSSSHGYDAPTPGAALSAPTPGAALSAPTPGAYSAPTPAAISAPTPGAWQGGWGADSAP
TPAPLGAPTPAASGAAAYGAPTPAPGAYSAETPAVPGYVDDD
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaaacgcgccgtttcatttcgcgggcgactccgagtcagacgacgagccgttc
aaccccgcacctgccgacatgtcggacgaggagaacgaggttgaggatgacagccgcaac
aagaagggccgtcgcagccccgctgacgatggcgatgaggatgagaacgaagagcaggct
gaggaaggcgctgaagaggaggatgctgagggagatggtgtcgctgaggatgatgaggaa
gaagagggaggagaggaggaggaggaggaggaggaggatgaagacgaagaggatgaggat
gttcaacagcatcgccgacgtcgtaagcgccgcaaggacctcggtgccgctttcttggat
atcgaagccgaggtcgaagacgaagaagaagccgaagatgaggaccgcgaggctgaaggg
atcgatgacttcatcgacattgcccatcccgacgacctcgaggaggtcagccgcctgcac
gacgagcggcagcaccgcgccctcgatcggcagcgcgagctggaagcgtcccttgatgct
gagaagcaggccgagattctgcgagaacgctacggcaagcgcgccgccagccgtggctat
ggagacatgaaggtcgtgccgaagcgcctgctcctgccgagcgtcgacgacccaagcatc
tgggctgttcgctgcaaggagggtaaggagagagaggttgtcttcaacatcatgcgtcgc
atcgaggagcgcatgggtacgcccaacgcgcttcccatcacggccgcctttgagcgcggc
ggccccaacagtgtcatgaagggctacatctacgtcgaggcccgtagacagaccgacgtc
ttgattgcgctcgatggcatgcttaatgtctatccgcgcaccaagatgatgttggtcgag
atcaaggacatgcctgatctgcttcgtgttaccaagacgcctacccttgagcctggcgcg
tgggtgcgtctgaagaggcccgccaaacatgctggcgaccttgcccaggtattggatgtc
accgagaacggtttggaagctcgtgtgcgctttattcctcgtctcgactacggtgttcgc
gacgatgcttcttcgaacctcactcctgacggcaagcgcaagcggcctggcatgccggct
ccgcgcccgccgcagcgtctcttcagcgaggccgaggcccgcaagcgcaacccccgctac
ctatctggcaatccccagaccaacacctggacgtacatgggcgaagagttcgagaacggt
ttccaagtcaaggacatcaagattcaatggctcgagaccaaggacgtcaatcccactctc
gaggaagttaccaagttcgccagcggcggcgaagacggcaccgagaacctcgacctcaag
gctctgtacaccagtctcaaggacagcaacaatgttacctatgtccccggtgacgtgatc
gaggtctacgagggtgagcaggctggtgtcataggaaaggcaatcagcgtgcagggtgac
atcgtcactctgcgtgtgaccgagggcgagctggctggccagactctcgaagttcccaac
aagggcctacgcaagcgcttccagcttggtgaccacgtcaaggtcattggtggcagccgt
tttcgcgatgaagttggtatggtcgtcaacattactgatgaccgagttactttgctttcg
gaccaaaccaataccgagatcactgtgttcagcaaggacctgcgcgaggctagcgacatt
ggtggacagggctcgcttggccagtactcccttcttgacctcgttcagctcgatcctact
accgtcggtgtaattgtcaaggtcgatcgcgagtccatggttgtgcttgatcagaacggc
gatacccgccaggtcatgccctcgcagatcgccaacaagctgccaaagcgccgtactgcc
gttgctgccgaccgcaatggctcggagatcaggctcgatgatgtcgtccgagagtatggt
ggtcagcaacgccagggcaagatcatccacatctaccggtcctatgttttcctccacagc
aacgccacgactgagaatgccggtgtgttcgtcacacgcgccggcaatgttatgacggtc
gctgccaagggtggtcgcgttaacgccaacgccggtcctgatctcagcgccatgaacccg
gcgctcaagcgcaaccccaacggcaccaacaacaacatgccccctcccaagcagtcattg
ggtcctgatcgggccctcaatcagcacgtgtcaatccgtcgcggtgtctacaagggcatg
atgggtatcgtcaaagataccactgagacgcatgcccgtgtcgagctgcacagcaagaac
aaggttgtcactgtgcccaaggccgatctcatctttcgcgacaagatcaccggcaagccg
atcgacatttacagtcgcggtggccggcccgctcccagctccagcggccgtcccggagat
tactctggcggcaggacgctcatgggtgcctccggaggcgagaggactcctgcttggggt
tcatcaaagtccaccgcacgcaccccagcctggggccgccccgaaacctccggctctcgc
actcctgcctggggcgacggctctcgcaccgtcaacccttacgacggttcccgcacggcc
tacggcggcgccacagcctatggcggctcccgcacgcccgcctggtcctccagtgccaag
accccagcccatgatggctttggccacggctccaagacccccgcttggtccgcctccgca
tcttcttcccacgacccctggggctcgaaaactcccgcttacggcgtctctgctcctaca
ccaggtgcttcaggctcagctaactcggcttccgatccgtggggctacactcctggagca
agcggctcatcctcgcatggatatgacgcgccgacgcctggtgcagcactcagcgccccg
actcccggagcggcattgtctgcgcctacaccgggggcatactctgccccaacgccagcg
gctatatctgcgcctacgccaggtgcgtggcagggcggttggggtgcggactctgcgccg
acgccggccccgttgggcgcgcccacgcctgcggcaagcggagctgcagcgtatggcgcc
ccaacgcctgcgccgggggcgtatagcgcggagacgccggctgtgccggggtatgtggat
gatgattga
DBGET
integrated database retrieval system
