Thermochaetoides thermophila: CTHT_0018310
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Entry
CTHT_0018310 CDS
T03100
Name
(RefSeq) ATP-dependent RNA helicase-like protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTHT_0018310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0018310
03036 Chromosome and associated proteins [BR:
cthr03036
]
CTHT_0018310
Enzymes [BR:
cthr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CTHT_0018310
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CTHT_0018310
mRNA degradation factors
5'-3' decay
Decapping complex
CTHT_0018310
Chromosome and associated proteins [BR:
cthr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CTHT_0018310
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
18255869
NCBI-ProteinID:
XP_006692327
UniProt:
G0S2S5
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MTDILIDKLRNSDADDDWKKGLNIPAKDTRTQTEDVTNTKGLEWEDFNLKRDLLKGIFEA
GYEKPSPIQEESIPIALAGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVPTR
ELAMQTSQVCKILGKHLGVNVMVTTGGTGLRDDIVRLQDAVHIVVGTPGRILDLASKQVA
DLSECPMFIMDEADKLLSPEFTPVIEQLLQFHPKDRQVMLFSATFPISVKAFSDNNMRDP
YEINLMDELTLRGITQYYAYVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKIT
ELGYSCFYSHAKMPQAARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNA
ETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIERELGTEIHPIPAEIPKNLYVYENPE
TIPRPISTFKPVPIGQKQLPMPQTSQQQQVPQQPQPQQPQQAQEQQKQAQQELQQQQAQP
AAQQGQPRSGHQNDWHGQNRQGYQQNRNMHQGNRGGYGGSHRGGRGRGGYQNQGQRHQNY
GAPQQRGPRQQQTA
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgacagacattctcatcgacaagctccgtaactctgacgcggacgatgactggaaaaag
ggtcttaacattcctgcaaaggatacaagaactcagactgaggatgtcaccaatactaaa
ggtctcgaatgggaggattttaatctgaagcgtgacctcctcaagggcatcttcgaggcc
ggctacgaaaagccctcaccgattcaggaggagagcatacctattgccctcgctggccgg
gacattctggcccgcgcaaagaacggcaccggcaagacggctgccttcgtcattcccgct
ctcgaaaagatcaacccaaaagtctccaagatccaatgtctaattctggtccccactcgc
gagctggcgatgcagacatcgcaggtttgcaagatccttggcaagcacctcggcgtcaat
gttatggtcacgacgggtggaacagggcttcgtgacgatatcgtccggttgcaggacgcc
gtccatatcgtggtcggtacccctgggcgtatccttgatctggcttcgaagcaggttgcc
gatttgagcgagtgccccatgttcatcatggatgaggccgacaagcttctgtcgcccgag
ttcacccctgtcatcgagcagctgctccagttccatcctaaagaccgtcaggtcatgctc
ttctccgccaccttcccgatctccgtcaaggccttctctgataacaacatgagggatccc
tacgagatcaacctcatggatgagctcaccctccgcggtattactcagtactatgcctac
gttgaagagaggcaaaaggtgcactgcctgaacaccctcttctccaaactgcagatcaac
cagtctattatcttctgcaactccaccaaccgcgtggagctgctcgccaagaagatcacc
gagctgggctattcctgcttctacagccatgccaagatgccccaggctgctcgtaatcgc
gtcttccacgatttccgcaacggcgtctgccgcaacctcgtctgctcggatctcctcacc
cgtggtatcgatattcaggccgtcaacgttgtcatcaactttgacttcccgaagaacgcg
gaaacctatctccaccgtatcggccgttcgggtcgttacggccaccttggtcttgctatc
aacctgatcaactgggatgacaggtttaacctgtacaacatcgagcgggaactcggcacc
gaaattcatcctattcctgcggagattccgaagaacctttatgtttatgagaaccctgag
accatcccgcgacccatctccaccttcaagcctgttcctattgggcagaagcagttaccg
atgccgcagacgtctcagcagcaacaggttccgcaacaacctcagccacagcagccgcag
caggctcaggagcaacagaagcaagctcagcaggagcttcagcaacagcaggctcagcct
gccgcccaacaaggccagccacgctctggccaccagaatgactggcacggccaaaatcgc
cagggctaccagcagaatcggaacatgcaccagggcaaccgcggcggttacggcggcagt
caccgtggcggacgtggtcgtggcggctaccagaaccagggccaacgccatcagaactat
ggcgctccgcagcagcgtggtcctcggcagcagcagacggcataa
DBGET
integrated database retrieval system
