Thermochaetoides thermophila: CTHT_0029860
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Entry
CTHT_0029860 CDS
T03100
Name
(RefSeq) putative nonsense-mediated protein
KO
K14327
regulator of nonsense transcripts 2
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03013
Nucleocytoplasmic transport
cthr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CTHT_0029860
03015 mRNA surveillance pathway
CTHT_0029860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0029860
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CTHT_0029860
mRNA cycle factors
P-body specific factors
CTHT_0029860
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
18257024
NCBI-ProteinID:
XP_006693441
UniProt:
G0S8H1
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MDRARRHELRELNVRAWNGETGLFPVAASLDSTMKKNTAFIKRLRTAISPATLNTFLQEI
KTVSLSKYLSEIISACHEGLCKLKSPGEIEAAVEIVSALHQRFGPHEFTCYLAWHLGKSL
ATPDKSVLKTLTPEAREKEEKDRLSRQRVLLRVVTELWLVGVLRTLDDAKRPDDVIANGA
TGKQAEVKSKASAKGNPAEPFPLEVLKDLLGHDREHVNLPLLVVFVKAFSWDVLGVRGAG
SEGRKTVEEDGATKAAAPPAEGNNASSAEDQQEGQPAPSSQDPPLTPPELQERFKNVLRR
YFEDVKQHLIRDQKALASQSRKNAEAYVKSGEVFEDRQANFEKQVKAQERLIANAQVIAD
AIGAEMPDLKEHEDVSATANGSIGLVKTGEYLRGQGDGPGIWEDEEERRFYENLVDLRGK
VPGILLEEVKKKKQDSDEQVGKKIDLETAAEAKQVDASAEDQSVAIANKTIGAQVDALLA
RLPDLTTKDAVDQMAIDFCYLNSKASRNRLIKALTDVPKGRTDLLPCWARLAATLGQYMS
DVPKGLVEYLDNEFRSLQRRKDKEFLGQVRLINIRYLAELTKFGVVPEHVVFHCLKVSLD
DFSRVNIEIICTMLENCGRYLLRNPETSPRMASFLETLQRKKSVQHIGQAEKMLIENAVY
YVDPPQRPAIQQKERTPMELFIRKLIYADLNKRSYDKVLRQIRRLHWEEKEVVAVLHKVF
SKPSKVKYSNIHLLAILLSALYRYHPAFVIGVVDTVIESIALGLEQNDFRYNQRRVAEVK
YLGELYNYRMLEHPVIFDTMYKIMTFGYGGPPIPGQINPFDPPDDFFRIRLIATLLETCG
MYFNKGTAGKKLDYFLSFFQYYIYTKNPLPMDIEFLVQDIFALTRPQWKLASNLEEATKA
FQLAIKSSGLDKAVEQDDQGSGVSSDDDANVEDGEKEEQDGDENDGEDEDEGEDDENAEE
EPSYRNDNDSDSERGNHDDDEDEEEEEEEAIVVTREEEEIDPEWEAEFDREYAKIMAESY
ETRKFERKQFDIPLPVRPKNQQRSDESGETGSGGQTTTPGKMAFSLLTKKGNRQQTKTVE
LPSDSSFAVAMINQRQAAKEEQQRIKNLVLNYDLREEEEDDDNDKPISHHHHFNRSENRN
SKDRGQRVRKLQLSDVDW
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggaccgcgcacgtcgccatgagctgcgcgagctgaatgtgcgggcgtggaatggcgag
acgggcctcttccccgtggccgcgtcgctcgactcgaccatgaagaagaacacggccttc
atcaagcgcctgcgcaccgccatctcccccgccactctcaacacgttcctgcaggaaatc
aagaccgtcagcctgtccaagtacctgtccgaaatcatctcggcctgccacgagggcctc
tgtaagctcaagtcgcccggcgagatcgaggcggctgtcgagatcgtcagcgccctgcac
cagcgctttggtccccacgaattcacatgctacttagcctggcacctgggcaagtcgctg
gccacgccggacaagagcgtgctcaagaccctgactccagaggcccgtgagaaggaggag
aaggaccgcctatcgcgccagcgcgtgctgctgcgtgtcgtcaccgagctctggctcgtc
ggcgtgctgcgcaccctcgacgacgccaagcggcccgacgacgtcattgccaacggcgcc
actggcaagcaggccgaagtcaagtccaaggcctcggccaagggcaaccccgccgagccc
ttcccgctcgaagtgctcaaggacctgctcggccacgatcgcgagcacgtcaacctgccc
ctgctggttgtctttgtgaaggccttcagctgggatgtcctgggcgtgcgcggcgccggc
tccgagggccgcaagacggtcgaggaagacggcgcgaccaaagctgcggctcccccggcc
gagggcaacaatgccagctccgccgaggaccagcaagagggccagccagctccgagctcc
caagacccgcccctgacgccgccagagctccaagagcgcttcaagaatgtgctccgccga
tactttgaggatgtcaagcagcatctcatccgcgaccagaaggcccttgccagccagtcg
cgcaagaatgccgaggcctacgtcaagtcgggcgaggtgttcgaggaccgccaggccaac
tttgagaagcaggtcaaggcccaggagcgtctaatcgccaacgcccaggtcattgccgac
gccatcggcgccgagatgccggacctgaaggagcacgaggatgtatctgccaccgcgaac
ggctccatcggcctggttaagaccggcgagtacctgcgtggtcagggcgacggacccggg
atctgggaggacgaggaggaacgtcgcttctacgaaaacctggtcgatctccgcggcaag
gtgcccggcattctgctcgaggaggtcaagaagaagaagcaggattctgacgagcaggtc
ggcaagaagatcgacctagagaccgccgctgaggccaagcaggtcgatgcttccgccgag
gaccagtctgtggccattgccaacaagaccatcggcgcgcaggtcgacgctctgctcgct
cgcctgcccgacctgacgaccaaggacgccgtcgaccagatggccatcgatttctgctac
ctcaactccaaggcttcgcgcaaccgcctgatcaaagccctgaccgacgtgcctaagggc
cgcaccgatctcctcccgtgttgggcccgcctggccgccaccctcggccagtacatgtcc
gacgtccccaaggggctggtcgagtacctggataacgagtttcgcagcctgcagcgccgc
aaggacaaggagttcctgggccaggtgcgcctcatcaacatccggtacctggccgagctg
accaagtttggcgtggtccccgagcacgtggtgtttcactgtctcaaggtcagcctggac
gacttttccagggtgaacattgagattatttgcactatgctcgagaactgtggccggtac
ctgctgcgcaaccctgagacgtcgccacgcatggcgagtttcctggagacgctgcagagg
aagaagtccgtgcagcatatcggtcaggcggagaagatgcttattgagaatgccgtctac
tatgttgatccgccgcagcgcccggccattcagcagaaggagcgcacgccaatggagttg
ttcatcaggaagctaatctatgctgatctgaataagcgcagctacgataaggtgctgagg
cagattcggaggcttcactgggaggagaaggaggtcgtcgccgtccttcacaaggtcttt
tccaagcccagcaaagtcaagtacagcaacatccacctcctggccatcctcctcagcgcc
ctctaccgctaccacccggctttcgtcatcggtgtcgtcgacaccgtcatcgaatccatc
gccctcggcctcgagcagaacgacttccgctacaaccagcgccgcgtcgccgaagtcaag
tacctcggcgagctctataactaccgcatgctggaacaccccgtcatcttcgacaccatg
tacaagatcatgacctttggctacggcggcccgcccatccccggtcagatcaacccgttt
gatccgcccgatgactttttcaggatcaggctgatcgcaaccctgttggagacgtgcggc
atgtatttcaacaagggtaccgcgggcaagaagctagattatttcctttccttcttccag
tattatatctacaccaagaaccctctgccgatggatatcgagttcctggtgcaggacatc
tttgcgctgaccaggccccagtggaagttggcttctaacctggaggaggcgaccaaggcg
ttccagctggccatcaagtcatctggtctggacaaggccgttgagcaggatgatcagggc
agtggggtcagcagtgatgatgatgcgaatgtggaggatggggaaaaggaggaacaggat
ggggatgagaatgacggggaggatgaagacgagggagaggatgacgaaaacgccgaggaa
gaaccctcctatcgcaacgacaacgactccgactccgagcgaggcaaccatgacgacgat
gaagacgaagaagaagaggaagaagaagccatcgtggtcacccgcgaggaggaagaaatt
gaccccgaatgggaagccgaattcgaccgggaatatgccaagatcatggcggaaagctac
gagacgcgaaagtttgagcggaaacaattcgatatccccttgcctgtgcgtcccaagaac
cagcagcgctcggatgaatcgggtgaaacaggcagcggggggcagaccacgacgccgggc
aagatggctttttcgctgctcaccaagaagggcaatcgccagcagacgaagacggtggag
ctgccgtcggattcgagcttcgcggttgctatgatcaatcagaggcaggcggccaaggag
gagcagcaaaggattaagaacttggtgttgaattatgatttgagggaggaagaggaggat
gacgacaacgacaagcctatctctcatcatcaccacttcaaccggtcggagaatcgcaac
agcaaggaccgtgggcaaagggtgaggaagttacagttgagtgatgttgattggtag
DBGET
integrated database retrieval system
