Thermochaetoides thermophila: CTHT_0033880
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Entry
CTHT_0033880 CDS
T03100
Name
(RefSeq) putative pre-mRNA splicing protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0033880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0033880
03041 Spliceosome [BR:
cthr03041
]
CTHT_0033880
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
CTHT_0033880
Spliceosome [BR:
cthr03041
]
Complex B
Other components
Prp19-related factors
CTHT_0033880
Complex C
CTHT_0033880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_2
TPR_8
RPN7
TPR_4
ARM_TT21
TFIIA
Motif
Other DBs
NCBI-GeneID:
18257426
NCBI-ProteinID:
XP_006693824
UniProt:
G0S620
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
MPSTLASDRQPDVALVCEDDAPYEQDILRNPGSIRPWLSYIEYKLQHGTLREQAFVMERA
CVQLPRSYKLWKMFRVNHISKLNPAIFATEYQKVNALFERALILLNKMPRIWEMYLKFLM
QQPLVTFTRRTFDRALRALPITQHNRIWALYRPFANSAEGITAVKIWRRYMQVHPEDAED
FIELLIQCGLYTEAVKKYIEILNNPKFQSKNAKGHYELWSEMVDLLVEHAVDIETGHETG
IDVERIIRSGIERFSDQRGKLWSGLATYWIRRGNFDRARDVFEEGITTVMTVRDFTMIFD
AYVEFEESVIGTLMEAASRRAEKGVVDESADFDLDIRMMRFEHLMDRRPFLLNDVLLRQN
PNNVAEWEKRVALWGDNKEEVVKTYTDAIAAINPKKAVGAFHLLWANYAKFYEKAGDLRT
ARIIMEKAVKVPFKSVNELADMWIEWAEMELRNKNFDEAVRIMAKATQAPKRSTVDYFDE
SLSPQQRVHKSWKLWSFYVDLVESTSSLEETRKIYERIFELRIATPQTVVNYANLLEEHH
YYEESFKIYERGLDLFSYPVAFELWNLYLTKAVDRKISIERLRDLFEQAITDCPPKFAKV
LYLMYGNLEEERGLARHAMRIYERATRAVADEDRADMFNFYITKSASNFGLASTRPIYER
AIATLPDNEARDMCLKFADMEKRLGEIDRARAIYGHASQFCDPRTNPEFWAKWEQFEVQH
GNEDTFKEMLRVKRSVQAKYNTDVNFIASQALARSQMLKQQQQQQQQQQQQQLQQQQQNG
SSGAGDPEVADAMAQLERQARAPAGFVAASENIKGTIAPSTQSVEVSNPDAIDLDDMDE
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcaaccttggcctccgatcgccagccagacgtggctcttgtgtgcgaagatgac
gccccttacgagcaagatattctgaggaaccccgggagcatcaggccatggctctcctac
atcgaatataaactgcagcatggaacactacgcgagcaagcctttgtcatggagcgggcg
tgcgttcagctgccgcggtcatacaagctctggaagatgttcagggtgaaccacatttcc
aagcttaaccccgccatttttgccaccgagtatcagaaagtcaacgccttgttcgagcgt
gccttgatccttttgaacaagatgccccggatatgggagatgtatctcaagtttctgatg
cagcagccccttgtgacttttactcggcgcacattcgaccgcgccttgcgagcactccca
attacccagcataataggatatgggctctttataggcccttcgcaaactcggcagaggga
atcacggctgtgaagatctggcggcggtacatgcaggttcaccccgaggatgctgaggat
ttcatcgagctcctcatccagtgcgggctgtacaccgaggctgtcaagaagtatatcgag
attctcaacaatccaaagtttcagagcaagaatgcaaagggtcattacgagctctggagc
gagatggtcgacttgctcgttgagcatgccgttgacatcgagacgggccacgaaaccggc
atcgacgtggagcgcatcatccggagtgggatcgagcggtttagcgaccaacgcggaaag
ctttggagtggtctggccacatattggattcgccggggaaatttcgaccgagcgcgggat
gtgtttgaagaaggcatcacgacggtcatgacagtgcgagacttcacaatgatttttgac
gcatatgtcgagttcgaggagtccgtcatcgggaccctgatggaagctgcatctagacgt
gctgagaagggcgttgtggacgagtccgctgacttcgaccttgacattcgcatgatgcgc
tttgagcatctcatggaccgtcgcccattcctcctgaacgatgtcctcctgcggcaaaac
cccaacaatgtcgctgagtgggaaaagcgggttgccctgtggggcgataacaaggaagag
gtggtgaaaacatacaccgacgctattgcagccatcaatccaaagaaagctgtcggtgca
ttccacctactctgggccaactatgccaagttttacgaaaaagcaggcgacttgcgtaca
gcccgcatcatcatggagaaggccgtcaaggtcccattcaagtctgttaacgaactcgcc
gatatgtggattgaatgggctgagatggaattgcggaacaagaacttcgatgaggcagtc
aggattatggccaaagctacacaagctcctaagagatcaaccgttgattactttgacgag
tctctctcgccacaacagcgagtccacaagagctggaaactctggagcttttatgtcgat
ctggtggaaagcacgagctcactggaggagaccaggaagatttatgagagaatatttgag
ctccgcatcgcgacccctcagacagtcgtgaactacgccaacctcctggaagaacatcac
tactacgaagagtcgttcaaaatctacgaacgtggccttgatctgttcagctatcctgtc
gcttttgagctgtggaacctctaccttaccaaggcagtcgatcgcaaaatcagcattgaa
cggcttcgcgaccttttcgaacaggccattaccgactgcccacccaaatttgccaaggtg
ctttacctcatgtacggcaacctcgaagaggagcgtggtttggcacggcacgctatgcgc
atctacgagcgcgccacgcgcgcagtcgccgacgaagaccgggccgacatgttcaacttt
tatattactaagtccgcatccaactttggtctggcctctacgcggccaatttatgaacgg
gcaattgcaacgctgcccgataatgaggctcgtgacatgtgcctgaagtttgctgatatg
gagaagcgtttgggcgagattgaccgcgcccgtgctatctacggacatgcatcacagttc
tgcgacccccgaaccaatcctgaattctgggctaaatgggagcaatttgaagtccagcat
ggcaatgaagatacattcaaggagatgcttcgcgtgaagcgcagcgtccaggccaagtac
aatacggacgtcaactttattgcatcgcaagcgcttgctaggagtcaaatgttgaaacaa
cagcaacagcaacaacagcaacaacaacagcaacaattgcagcaacagcagcaaaacggc
agctctggcgcgggagatcccgaggttgcagatgctatggcgcagctggaacggcaagct
cgggccccagctgggtttgtggccgcgtctgagaatatcaagggcaccattgcgccgtca
acccagtcggttgaggtgtctaacccggacgccatcgacctcgatgatatggatgaatga
DBGET
integrated database retrieval system
