Thermochaetoides thermophila: CTHT_0035640
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Entry
CTHT_0035640 CDS
T03100
Name
(RefSeq) putative pre-mRNA splicing factor
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0035640
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cthr03041
]
CTHT_0035640
Enzymes [BR:
cthr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CTHT_0035640
Spliceosome [BR:
cthr03041
]
Complex C
Other components
Step II factors
CTHT_0035640
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
AAA_30
Peripla_BP_6
nSTAND3
AAA_14
Cas3-like_C_2
T2SSE
AAA_16
SRP54
ATPase
PhoH
AAA_7
TsaE
AAA_23
Motif
Other DBs
NCBI-GeneID:
18257602
NCBI-ProteinID:
XP_006693994
UniProt:
G0S700
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
1222 aa
AA seq
DB search
MRRREQQQLHLHSEARSRAGFLPLTSSPCCCADQPQQLADKMDDLESLELLSLVSKVTSE
LQNHLGINEKTLAEFVIAQRLECATFEDFKAKLAAVGADFPPSLMESIDRLVRTMHPKFK
GKQNGDQREDREEKPPKSLEEKAAIFKGLAIPDREIEPADDIDDTLALLESLEPKRADKD
RPSRKRSRSPEDYDGSYRSRKDRYRSRSRSPARFRSRSLSRSRSKSPRRGRRKSSRYDED
DTFRRPPPRDLDDAPQLYKIYDGHVTGIKDFGAFVNLHGVKGKIDGLVHISAFGQRVNHP
SDAVSMGQNVKVKVIKIEGNRIGLSMKDVDQETGMDLAPQMRIGSGANMEALGGSRRGIG
GSDGAANGPPLSGATRPQKKRLTSPERWEIRQMIAAGIAKASDYPDLEEEYNATLRGEGQ
MELEEDIDIEIRDEEPPFLAGQTKQSLELSPIRVVKAPDGSLNRAAMTGAQLARERREAR
QQEAEEQQEKAKVDLSSQWQDPMANPEHRQFASDLRKRAQAQTSSDSVPEWKRAIAPKNQ
SFGPRTNMSIKEQRESLPVFQFRDQIIQAVKDNQILIVVGETGSGKTTQVTQYLAEAGFT
KYGMIGCTQPRRVAAVSVAKRVAEEVGCQLGQEVGYTIRFEDVTSPATKIKYMTDGMLQR
EILMDPDLKRYSVIMLDEAHERTIATDVLFALLKKTVKRRPDLKVIVTSATLDAEKFSEY
FNSCPIFTIPGRTFPVEILYSREPEPDYLEAALTTVMQIHLTEPPGDILVFLTGQEEIDT
ACEILYERMKALGPSVPELIILPIYSALPSEMQSRIFEPAPPGSRKVVIATNIAETSITI
DYIYYVVDPGFVKQNAYDPKLGMDSLVVTPISQAQANQRAGRAGRTGPGKCFRLYTEAAY
QSEMLPTTIPDIQRQNLANTILLLKAMGINDLLRFDFMDPPPVNTMLTALEELYALGALD
DEGLLTRLGRKMADFPMEPSLSKVLIASVDKGCSDEMVTIVSMLNLQQIFYRPKDKQQQA
DQKKAKFHDPTGDHLTLLNVYNAWKNSGYSNAWCFENYIQARAMRRARDVRQQIVKIMER
HRHPIISCGRDTDKIRQALCAGFFRNTARKDPQEGYKTLTEGTPVYLHPSSALFGKQAEW
VLYHELVLTTKEYMHFTTAIEPKWLVEAAPTFFKLAPTDRLSKRKKAERIQPLYNKYEGE
DGWRLSAQRRAARPGGGGGTWG
NT seq
3669 nt
NT seq
+upstream
nt +downstream
nt
atgcgtagacgagagcagcaacagctgcatttacactctgaagcgcgctccagggccggc
tttttgccactaacctcatcgccttgctgctgtgcagaccagccgcagcaactggccgac
aaaatggacgacctagagtcgcttgagctactttccctcgtgtcgaaagtcacgtcagaa
ttacagaatcacttagggattaacgaaaagacactggccgagtttgttatcgcccagcgt
ctggaatgtgcgaccttcgaggacttcaaggccaagctggccgccgtcggcgccgacttt
ccgcccagcttgatggaaagcattgatcgcctcgtccggacgatgcaccctaaattcaaa
gggaagcagaatggtgaccaaagggaagaccgtgaagagaaacctcccaagtctttggaa
gagaaagcggcgattttcaaggggcttgccattcccgaccgggagatcgaacccgccgac
gacatcgatgatactcttgctctgctcgagagcctggagccgaagcgcgcagataaggac
cgtccatcgagaaagcgcagccggagcccagaggattacgatggctcgtatcggagccga
aaggacagataccgctcacggtcgaggtcaccggcaaggttccgctcacggtcactgtca
agatccaggtctaaatcgccacgacgaggtcgtcgtaagagcagccgatacgatgaagat
gatacgtttcgtcgcccaccgccacgggatttggacgatgccccacagctgtacaaaatc
tatgatggccatgtcacaggtatcaaagactttggcgctttcgttaacttgcatggagtg
aagggtaaaatcgatggtttagtgcacatttcggcgtttgggcagcgagtgaaccatcca
tcggacgccgtgtcaatgggccagaacgtcaaagtgaaggtcatcaagattgagggcaac
cgcatcggactgtcgatgaaagatgtcgatcaagaaactggaatggaccttgcaccgcag
atgaggataggctccggcgccaatatggaggccttaggaggctccaggagaggcataggt
ggctctgatggtgcggcaaacgggccgcctctatctggagcaacaagaccgcaaaagaag
aggttaacgtctcctgaaagatgggagatccggcagatgatcgccgcggggattgcgaag
gcgtcagattatccggacctcgaagaagagtacaatgccactctcaggggcgaaggtcag
atggagctggaggaagacattgacattgagatccgggatgaggagcctccgtttctcgct
ggacagacaaagcagtcgctcgagctgtcgcccatccgagtggtcaaagcccccgatggc
tccctcaatcgtgcggccatgaccggtgcccaacttgcgagagagcgtagagaggctcgc
caacaggaggccgaggaacagcaagagaaggctaaggttgacctgtcatctcaatggcag
gatcccatggccaatcccgagcatcgccaatttgccagtgatttacgcaagcgcgcacaa
gcccaaacctcttctgattctgtccctgaatggaaacgagccattgcaccaaagaatcag
tcgtttggccctcgaaccaacatgtccatcaaggaacagcgggaatccttgcctgtgttt
cagttccgagatcaaatcattcaagctgttaaggacaaccagattctcatcgtggttggt
gagacgggttctggcaagacgactcaagtcacgcagtaccttgcagaggccggtttcacc
aaatatggcatgattggatgcacgcaacctcggcgtgtcgccgccgtttcggtcgccaag
cgtgtggctgaagaagttggctgtcagctaggccaagaggttggctataccatcagattc
gaagatgttactagtccggcgaccaagatcaagtacatgacggacggaatgttacaacgt
gaaattctgatggaccctgatctcaagcgttactcggtcatcatgttagacgaggcccac
gagcggacaattgcaaccgatgtgctattcgcgctgctcaagaagacggttaagcggcgg
ccggaccttaaggtcattgtcaccagtgctacccttgacgcagagaagttcagcgagtac
tttaactcgtgtcctattttcaccattcctggccgaacgttccccgtggagattctctac
tctcgagaaccggaaccggattacctcgaggcagctctgactacggtaatgcagatccac
ttgacggaacccccaggagatatcctagttttcttgaccggccaagaagaaattgataca
gcctgcgagatcctatatgagcgaatgaaggcattggggcctagcgtcccagagctcatc
atactgccgatttactctgcgctgcccagcgagatgcaaagccgaatctttgagccagca
cctcctggcagtcgtaaagtggtcattgccacaaacatcgctgaaacatccatcacgatc
gactacatctattacgttgttgatcccggcttcgtgaagcagaacgcctatgatccaaag
ttgggaatggattctcttgtggtcacccctatttcccaggctcaagccaaccaacgtgct
ggacgagccggtcgtacaggtccgggcaagtgctttcggttgtatacggaggctgcatac
caatcagaaatgcttccaacgactatcccagacatccaacgacaaaatctagccaatacg
atcctgttacttaaggccatgggtatcaacgaccttcttcgttttgactttatggatcct
ccgcccgtcaacacaatgcttactgcactcgaagaactttatgcactgggcgctttggac
gatgaaggcctgctgactcgcctgggaaggaagatggccgacttccccatggagccctct
ctgtcgaaggtcttgatcgcctctgtcgacaagggctgttcggacgaaatggtgacaatt
gtttccatgctcaacctacagcagattttctaccgaccaaaggataagcagcagcaagcc
gaccagaagaaggccaagttccatgatccgacgggagaccatcttacccttctcaacgtc
tacaatgcctggaaaaatagcggttactccaacgcctggtgttttgagaactacatccag
gcgcgggccatgcgtcgtgctcgggatgtacggcagcagatcgtcaagatcatggaacgc
caccgtcatcccatcatcagctgcgggcgtgacaccgacaagatccggcaagcgctctgc
gctggcttcttccgtaatacggcacgcaaggacccgcaagagggctacaagacactgacc
gagggcacgccggtgtacctacaccccagctcggcgctttttggaaagcaagccgagtgg
gtgctttaccacgagctggtactgacaactaaagagtatatgcattttacgacggccatt
gagcccaagtggctcgtggaagccgctccaacattctttaagctcgcgccgacggacagg
ttgtcgaagaggaagaaggccgagaggatccagcccttgtacaacaagtacgagggtgaa
gatggctggcgtctcagcgctcaacggagggctgcacggccgggtggtggtggcggtacc
tggggctaa
DBGET
integrated database retrieval system
