Thermochaetoides thermophila: CTHT_0042590
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Entry
CTHT_0042590 CDS
T03100
Name
(RefSeq) putative nuclear pore protein
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CTHT_0042590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0042590
03036 Chromosome and associated proteins [BR:
cthr03036
]
CTHT_0042590
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
CTHT_0042590
Chromosome and associated proteins [BR:
cthr03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
CTHT_0042590
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nucleoporin_FG
Nup98_GLEBS
DUF6435
Motif
Other DBs
NCBI-GeneID:
18258297
NCBI-ProteinID:
XP_006694660
UniProt:
G0SAK3
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
1793 aa
AA seq
DB search
MSFGFGSGGFGQNNNSSTFGGFGSTPTTNTGFGSTGTTAFGSTSNTTGGGLFGGGGGGFG
SGNTFGSGFGSKPAFGTPATTSSTSLFGSTTTTAGGTGFGSGGFGSTNTSSPFGGGGTSL
FGNKTTTGFGSGTSTFGSNTGGGLFGGGSTTTGFGATNNPGIGTNVGDPPGTAVVPFSPT
VEKEVNNPSQSNSYQNILFMDAYKKWSAEELRLADYNQGRKTAAPGGTGAFGSSGFGGFG
TTSNTGGFGSNTGGGLFGNTQQNTGGFGTTNTTGSAFGSGGGLFGNKPATGGLFGTSSSQ
PAQSGGLFGSGTASTFGSSNTGTTSTFGSNNNTGGGLFGSNNTSSKPAFSFGTSNTSTPG
FGTATTGSGFGTGTTTNTGGGLFGNTAQNTNTGGGLFGNQQQSGSAFGSGTGFGQQNQST
GTSLFGNTQQKPGGLFGSTTTNTSGGLFGSTNTGTSTFGQTPATQNTGGGLFGSKPAGTG
GLFGSTATNQPASTGGLFGNLNTNAQTQQPATGGLFGNLGQNNQAKPSLFGTSTTTGGGL
FGNTNAQQQTGSLFGTSTAQQQPQTGLGASLFGSSQQQQQQPQTFSTSITDISAYGATTL
FSGLPDDKIQNPGPLATPLSGKAKVKSRSILPMYKLSPANASRLVTTPQKRAYGFSFSAY
GSPTSPSSSASSTPGAFGQSILSSSINRGLNKSISASNLRRSLNVEDSILQPGAFSANSS
MRLLGGPGSHKKLVINKDMRTDLFSPPNKDKQPQEDGTAARKTVTKRVSFDTSNVETPEK
TIESSIPATDDSGYLKPDARSTANGTNGANGAKSSPVAAASPPEMEQVKGKELAVVHEEE
SPAPAQTDKPRGSQIEPGAYWMSPTADDIRAMNRMQRQRVVGFTVGRENVGSVQFKVPVD
LSNINLDDLFGTIVILEPRSATVYPNAAKKPPMGKGLNVPALISLEHSWPRGGPTIKGRR
LERHIERLKSIPDTTFESYDPETGVWAFSVEHFTTYGLGDDDDYDDDDYETEPESAVKST
PRPVTSPSISKSSTSPIDPDDTFEFRRSRRALPGAFDDAALSDTDEVANHAQRQGTLSPE
PQDADTPLPSREWPEDESMADGLDEYQLEAYEEASQQGSVDEQEDFLPSRFAADNDAPQV
PAGIMRARMRAVKKLNAPTKIEVAGGDDWTQILQASVKAPRTMDRATLRALNESGAVWEM
KDRGSPPPQATATVSDGMGFATSIDLMKSLFEQAKAPTQPALTTSGKGFVKWPYEQRSKT
DTEENLAVPRTNWGPNELLISTQHNEPNLLPVDAADDSATSPSTLARLQQYINLVSSKKQ
LQRVAGPEFRELAQGDSVWELAALLFDDNGEGVSQFWQQLVSEATDRALSFTAGLEEKAI
ICLAGNRVDEACRHLLAAGNFRLATLVSTIGKVDNKDIRAQLKDWRESNVLAEFSEPIRA
IYELLAGNASVCAGVKNVPIENRVNSFTISQRFGLDWMRSFGLRLWYTSGVIPDVAAAVR
SFQEDIEQDREPEPDSALWTLLKAFASREYDWSDTRLGWLLTKAIYTTGKVSFGEDALQK
LDKASVTFASALTAASHWVPATFVLLQLSDPASREAAVRDHLGRHAHRIGSPRNLMSPFF
TLQKFGVPEAWIWEAKALDYRSRQDSQQEFLALIWAQNYAEANRTFVTRVGPDLVIERNL
PRLFAFAQLLFKVKKHLPNWERSAAVYLLYPMAVMQNQGSGKLDRFDNQLIDGLVALHSQ
THGDIRQEAAIADMAEELIKCKGAAAASDPRLLQLLPQDVRGKYLRAQVLEAF
NT seq
5382 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcggtttcggcagtggcggcttcggccagaacaacaattcatcgacttttggt
ggctttggctcgactccgaccacgaacacagggtttggttcgaccggcaccacggcattt
ggctcgacctccaataccaccggcggcggtctgtttggcggtggtggcggcggcttcggc
tccggcaacacctttggcagcggctttggcagcaaaccggcctttggcacacccgccacg
accagctccaccagtcttttcggctccacgaccaccactgctggcggtaccggcttcggc
agcggtggctttggcagcacaaataccagctctccattcggtggtggcggtacgtcactc
tttggcaacaagactaccaccggcttcgggtctggcacatcgacttttggaagcaacact
ggcggcggcctctttggcggcggctcaaccaccaccggtttcggtgccactaacaatcca
ggcattgggaccaatgtcggcgatccccctggcacagccgttgttcccttctctcctact
gtcgagaaggaggtgaataatccctctcagagcaattcgtaccagaacatccttttcatg
gatgcctacaagaaatggtctgccgaagaattgagattggcggattacaaccagggtcgc
aagactgctgcccctggcggaactggtgcctttggcagttccggttttggcggctttggc
acaacttccaacactggcggtttcggttccaatactggcggtggcctgttcggtaacacc
cagcagaatactggaggctttggcacgaccaataccactggtagcgcctttgggtctggc
ggcggcctcttcggcaacaagcctgccactggcggccttttcggtacttcatcctcacag
cccgctcagagcggtgggttgttcggtagtggcaccgctagcactttcggttccagcaac
actggcaccacgagcaccttcggctctaacaacaacaccggcggcggcctgtttggaagc
aacaacacttcctcgaagccagcctttagctttggcacttctaacaccagcactccgggc
ttcggcaccgcaacgaccggttctggttttggcacaggcactaccacaaacaccggtggc
ggcctctttggtaacacggctcagaacactaacactggtggtggtctcttcggcaaccaa
cagcaatctggctctgcgtttggcagcggcaccggctttggccaacaaaatcagtctact
ggcacatcgctgttcggcaacactcagcaaaagcccggtggtttgttcggctctaccacg
accaatactagtggtggccttttcggaagcaccaacacgggcacttctacctttggccag
actcccgccactcagaacacgggcggcggtctgtttggttccaagcctgccggcaccggt
ggcttgttcggttctaccgccactaaccaacctgcttctactggcggtctctttggaaac
ctcaacactaatgctcaaacccaacagcctgcgacgggtgggctgtttggcaatctgggc
cagaacaaccaagccaaaccctctctgtttggtacctcgacaaccactggcggcggtctc
ttcggtaacacgaacgctcagcaacagaccggaagtctattcggaacctctactgcccaa
cagcagccgcaaacgggcttgggcgcttcgctctttgggtcttctcaacagcaacagcag
cagccgcagactttctcgactagtatcaccgacatatctgcgtacggtgccacaacactg
ttttcgggccttcccgatgacaagatccagaatcccggtcccctcgcgacgcctctgtct
ggcaaggccaaggttaagagccggtcaatcttgcccatgtacaagctcagcccggccaac
gcatcccgccttgtcactaccccacaaaagcgcgcttatggcttctcattcagtgcctac
ggatcgcccacaagcccgtcctccagcgcgtcgagcactcccggtgccttcggccagagc
atcctttctagcagtatcaatcgcggcctgaacaagagcatctcggctagcaaccttcgt
cgctccctcaacgtcgaggatagcatcctccagcccggtgcgttctctgctaactcgagc
atgcgcctgcttggcggccctggcagccacaagaagctggtcatcaacaaagacatgcgt
accgatttgttcagtcctccgaataaggacaagcagcctcaagaggatggcactgccgct
cgcaagaccgtgaccaagcgcgtcagcttcgacacaagcaatgttgagactcccgagaag
acaattgaaagcagcatccctgccactgatgattccggctatctgaagcctgatgcccgt
tctaccgccaacggcactaacggcgcgaatggcgccaagtcgtctcccgttgctgctgcc
tccccccccgagatggagcaggttaagggcaaggaactcgctgtcgtccacgaagaggag
tcccctgctcctgctcagaccgacaagccgcgcggttcccagattgagcctggcgcctac
tggatgtcgcccactgctgacgatatccgcgccatgaacaggatgcagcgccagcgcgtt
gttggctttactgttggccgtgagaatgtgggcagtgtccagttcaaggttcccgtggat
ctgagcaacatcaatcttgatgatctctttggtactatcgtcattttagagccgcgctcc
gccactgtttacccgaacgcggccaagaaacctcctatgggcaagggtctgaacgtgcct
gctcttatttccctggagcactcatggccccgcggcggtcctacaatcaagggccgtcgc
cttgagcgccacattgagcgcctgaagtccattcccgatacgacgtttgagagctacgac
cctgagactggtgtctgggctttctcggttgagcatttcacgacctatggtttaggtgac
gacgatgactacgatgatgatgactacgagacagagcccgagtctgccgttaagtcgact
ccgcgcccggtgacgagcccgtcgatctctaagagctcgacctcccctatcgaccccgat
gacacgttcgaattcaggcgcagccgccgcgcccttcccggcgccttcgatgatgctgct
ttgtctgacactgacgaggttgctaaccacgctcaacgccagggtacgctgtctccggag
ccgcaggacgctgatacccccttgccatcgcgggaatggcccgaagatgaaagcatggct
gacggtctcgatgaataccagctcgaagcctatgaagaggcgtctcagcagggatccgtc
gacgagcaggaggattttttaccctcgcgtttcgccgccgacaatgacgccccccaggtc
cctgctggaatcatgagggcacgcatgcgcgcggttaagaaattaaatgcgcccacgaaa
atcgaagtagccggtggtgatgattggactcagattttgcaagcgagcgttaaggctccc
cgtacgatggatcgggcaacattgcgggctctgaacgagtctggtgcagtgtgggaaatg
aaggatcgtggcagtcctcctcctcaggcgactgcaactgtctccgacggaatgggcttt
gccaccagcatcgatttgatgaagtcgctgtttgagcaagcgaaggccccgactcagcca
gcgttgacgacttccggcaaagggtttgtgaagtggccttatgagcaacgttctaagact
gataccgaggaaaatttggcagttccccgaaccaactggggccctaacgaacttttgatt
tcaacccagcacaacgaaccgaatctgttgcccgttgatgctgccgacgactctgccaca
tctcccagcactcttgctcgtcttcagcagtacatcaaccttgtttcgagcaagaagcaa
ctccagcgggtagctggcccagagtttcgtgaactggcacaaggtgattccgtttgggag
ctcgccgcactactcttcgatgacaacggtgaaggtgtttctcagttctggcagcagctt
gtctctgaggctactgaccgcgccctttctttcaccgccggtctcgaggagaaggccatc
atttgcttggctggcaaccgtgtggacgaagcttgccgccacttgcttgctgccggcaat
ttccgacttgctactctcgtgtcgaccatcggcaaggttgataataaggacatccgcgcc
cagttaaaggattggcgggagtcaaacgtgctggctgagttctccgagcccattcgggct
atctatgagctcctggctggcaatgcgtctgtttgtgctggggtcaagaacgttccaatc
gagaatcgcgtcaattctttcaccatttctcagcgtttcggattggattggatgcggtca
ttcggtctgcgcctgtggtatactagcggtgtgattcctgatgttgctgcagcagtccgt
tccttccaggaggatatcgagcaggatcgcgagccagagcctgacagcgcgctgtggaca
cttctcaaggccttcgctagccgcgagtacgactggtcggatacacgcctcggatggctc
ctcactaaggccatctatacgacgggaaaggtctcgtttggtgaggatgctttgcagaag
ctcgataaggcatcagtcacctttgcctcggcgctgacggcggcatcccactgggtcccg
gccacctttgttctcctccagctttccgaccccgcttcgcgcgaggccgcagtccgtgac
cacctcggccgccatgcccaccgcatcggctctcctcgcaacctcatgagtcccttcttt
actctccagaagtttggcgtgccggaggcttggatatgggaagccaaggccctggactac
cgctcccgtcaggactcccaacaggagttccttgccctcatctgggcacagaactacgcc
gaagcgaaccggacatttgtcacgcgcgttggtcccgacctggtcatcgagcgcaacctc
ccgcgcctgtttgccttcgcccagctgctcttcaaggtcaagaagcacctgcctaactgg
gagcgtagcgctgctgtatacctcctttacccgatggccgtgatgcaaaatcagggctct
gggaagttggatcgctttgacaaccagctcatcgatggtctggtggcgcttcacagccaa
acccacggcgacatccgccaggaggcggccatcgcagatatggcggaggaattgatcaag
tgcaagggcgccgctgctgcttcagatccacggttgcttcagctgctgccgcaagatgtt
cggggcaagtatctgcgtgctcaggtgctggaggcgttttga
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integrated database retrieval system
