Thermochaetoides thermophila: CTHT_0043390 Help Entry CTHT_0043390      CDS       T03100                                  Name (RefSeq) hypothetical protein   KO K10643   CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27] Organism cthr  Thermochaetoides thermophila Pathway cthr03018   RNA degradation Brite KEGG Orthology (KO) [BR:cthr00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     CTHT_0043390  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:cthr03000]     CTHT_0043390    03019 Messenger RNA biogenesis [BR:cthr03019]     CTHT_0043390    04121 Ubiquitin system [BR:cthr04121]     CTHT_0043390 Enzymes [BR:cthr01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      CTHT_0043390 Transcription factors [BR:cthr03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     CTHT_0043390 Messenger RNA biogenesis [BR:cthr03019]  Eukaryotic type   mRNA surveillance and transport factors    mRNA cycle factors     P-body specific factors      CTHT_0043390   mRNA degradation factors    3'-5' decay     Ccr4-NOT complex      CTHT_0043390 Ubiquitin system [BR:cthr04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     CTHT_0043390 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  zf-RING_4 RRM_1 Rtf2 zf-C3HC4_3 zf-RING_2 SET_assoc Prok-RING_4 Nup35_RRM_2 zf-UDP zf-C3HC4 CD59 Baculo_IE-1 zf-RING_5 Motif Other DBs NCBI-GeneID:  18258377 NCBI-ProteinID:  XP_006694736 UniProt:  G0S8U0 LinkDB All DBs Position Unknown AA seq 1709 aa AA seqDB search MAPPNNDSYIEEEEDYCPLCIEEFDLSDRNFRPCPCGYQICQFCFNNIRNNMNGLCPACR RPYDDKTIQWKVVTQEEIAEFKANIQKNQKKRAQEQRQKEAQKREAEKDSRKNLVGVRVV QKNLVYVTGLQPTAREEELLKTLRKPEFFGQYGNILKISISKRKGNDGQESMGVYVTFDS KEAAQRCIMAVNGSQNGDRILRAQLGTTKYCSAWLRHEQCTNRQCMFLHELGDEEDSYSR QDLSSMNSINSQRPLNNSGTSRSASRQQAHASPATSNAQPMARTSSKDGANHDDGPALPP TAKWAQNSQVRSRRGSQATTGAAPSPAMSTSVPANSESAVEDSTGSSANASNSAQPKMPS TAAEKARRALPQDALKSLLKSLEGCSLAWPKFGGDPSAFEFAKNFPPMFDPRGGQRRRAL RASEAASSVAGDQSASGARTASEAGEPESSGSHALGGEPEDRDHGRDVHGYDPRRVAQQP PLQRGSTDGLFGQTVGAPGFNQAAAAGALGSVGSRAMTPQQPSFMRQPSNYIDHLSAQAS LFQGQGHTRQSSRFNFTNDGRDAASAATSVKLAANPRIMAQQSSMMPSTFHSQPGSQYYA ATMPGPPPGLKSTSTPPGMFGQHGFGAAAGFGAAAAQKENSDILHLFNRGRGAGTQGHDA GKRELLFPSFPTEFPSSSTSSTPAPASSHLATLYGSQPGAFQDLGSKQKKKGKKHRHANT SSSGGSGLVDLADPSILQARMQSQQHLQQQSNAGLGQGLFGGQTQGGYTNPAMMYNPGYR AWQEGVWDDAFEEGRHHFAPGENCTTRGSRVTSSRQALSSSSLKVSPCPFNNPQYDDLFF EDQVRSSIDALVADEPIETPIRYPPGAFGVLNRSGTPSVPPGFSFPSAHPSPAVSHASLP PTSVGRQTPPVALPKVPVKPTAPPVSSPLAGKRTVTPSTSHAKLAKTAEGTPSKDATKAM PAKVLADEDFPALGSPKPATATTSTAVPPPKLTAEKATASKPKKSIAERAAEKALAKLEK EEKERKEKEKLKKEKEEKEAKEREKEKGKEKEKEEKSKDKGKENKEKEPEKGKPAVKEAF KPVAPAPEKALERASEKAADKKADMRPTPGILDITAATRTAKVIKIVDAPTPSDKSAAAD KDANFPAFTTPTPVSAPSPVTRVAPKTLRVVSTPKTESPSTPVLAAPVSKPVATLAIRPE TPASEMISDSASIISASISVSRASSPPPSKIGSAPVRTKTKSQQRKERKEALKKESASIA AAPVKTEPPEEIGPITARKKKQKKDKEKPSSNKAIASASRPDTPTIKEKEKEEKEKEKEK EKVQEKESSTYRSTAGETTTLTGEPAPRKLAELKPKTTDPSKPRTLPTPASVLHELQRAG FVSSNIDELPFFKPVTSQLDKSHPGLRDLATRNSMAPTKSIVTEEDQAQLLAGNPVRKVV DGIRILLTPNGDCIRNLTPEEEDRFLELQQRVAEAATNPASWVSSRHENTGGFSLIKGRA VPNGPPSYFPPAPGAYPSDPVNKIQREEAIYYINQYVLPRLNLNSRDVTLPKGSSSNGSS ASASVSSAAQAAASLNSVAPWLYASVSSSSPHDTEPAPPELSYPGPVGSFSDPRDLPGHA SYLDVPSPADGTNGTVGTSSMLSFPSPTPFGNVPLMSLEDAEAALCAARKETEKLEKSLM QLMKKNKKLLLQQTTTATATVGAGGGGGH NT seq 5130 nt NT seq  +upstreamnt  +downstreamnt atggcgcctcctaataacgacagctatatcgaggaagaggaggactactgccccctttgc atcgaggagttcgacctttctgaccggaacttccgaccatgtccgtgtggataccagatc tgccagttctgcttcaataacattcggaacaacatgaacgggttgtgtccagcatgtcgg cgtccatacgatgacaagacgatccaatggaaggttgttacgcaggaagagatcgccgaa tttaaggccaatatccaaaaaaatcagaagaagcgtgcccaagaacagcgacagaaggag gcccagaagcgagaagctgagaaagacagccgcaagaatttggttggcgtgcgggttgtt cagaagaacctggtttatgtgactgggttgcagccgacagcgcgcgaagaggagctgctc aagactctccggaagccagagttcttcggtcagtacggaaacatcctcaaaatctccatc agcaagcgcaagggcaacgatggccaagaatcgatgggggtctacgtcaccttcgactcg aaagaggctgcccaacgctgtattatggccgtcaatggctcgcagaatggcgaccggatc ctgagagctcagctcggtacgactaagtactgctctgcatggcttcgtcacgaacagtgt acgaatcggcagtgcatgtttttacatgagctcggggacgaggaggatagctacagccgc caggatctatcatctatgaacagcattaactcgcagcggccgctgaataattctggcacc tcacggtctgcttctcgacagcaggctcacgcgtcaccggccacgagcaatgcacaaccg atggcgaggacttcaagtaaagacggagccaatcacgacgacggcccggcgctgccacca acggctaagtgggctcagaattcccaggttcgcagtcgtcgtggcagtcaggctacaact ggtgcggctcccagcccggccatgtcgacttctgtgccggccaactccgaatctgccgtc gaggatagcaccggatcttctgcgaacgcctcgaattctgctcagccaaagatgccaagc acagcagctgagaaggccaggcgcgcccttccccaagacgcgctcaagtccttgctcaag tcgctcgagggttgttccctcgcgtggcccaagtttggtggcgatccgtccgcctttgaa ttcgcaaagaacttccctcccatgtttgatccccgcggcggccagcgccggcgtgccctt cgtgcatctgaggcggctagcagtgtcgctggcgaccagtcggccagcggcgcccgtaca gcatcagaggccggcgagccggagagcagcggtagccacgcgctcggtggtgagcccgag gatcgtgatcacggtcgcgacgtgcacggctatgacccacgtcgcgttgcgcaacagccg cccctccagcggggtagcactgacggcctctttggccaaactgtcggcgcccctggcttc aaccaagcggcagcggcgggtgctctcggctcggtgggcagccgggccatgacacctcag cagccgtcgttcatgcggcagccgagcaactacatcgatcatctatctgcacaagcaagc cttttccagggccagggccatacccgccagagttctcgcttcaacttcactaacgacggc agagacgcggcctcggcggccacctctgtcaagcttgcagcaaaccctcgcatcatggca caacagtcttccatgatgccgtcgaccttccacagccagccaggctcccagtactacgcc gccacgatgccgggcccaccgccggggctcaagtcgacaagcacaccgccgggcatgttt ggacaacacggattcggagcggctgccgggtttggcgccgccgcggctcagaaggagaat agcgacatattgcacttgttcaatcgtggtcggggtgccggcacccagggccatgatgcc gggaagcgtgagttactgttcccttctttccccacagagttcccgtcctcttctacctcc tccaccccagctcctgcctcgagccacctggcaacgctctacggttctcagcctggagcc ttccaagacttgggttcaaagcagaagaagaaggggaagaagcacagacacgctaacact tcctcctctggggggagtggcttagtagatcttgcggacccgagtatcctgcaggcgaga atgcagtcccagcagcatctgcagcagcagagcaatgccggtctcggacagggactgttc ggtggccagacgcaaggtgggtacaccaatcccgccatgatgtacaacccgggttaccgg gcgtggcaggagggcgtttgggatgatgccttcgaggagggtcgccaccacttcgcccca ggggagaactgcaccaccaggggttctcgggttacgtccagcaggcaagctctctcatcg tcttccttgaaggtctctccctgccccttcaacaacccccaatatgacgatctcttcttc gaggaccaggttaggtcgagcatagatgctcttgtagccgacgaacctatcgagactccc attcgctacccgcccggtgcatttggggtcctgaatcgatccggcaccccctctgtcccc cctggattctcttttcctagcgcacacccttctccggcagtctcgcacgcttctcttccg ccaaccagtgtcggacgacagacacctccagtagcactccctaaggttccagtaaaacct acggctcctcctgtctcaagcccgctcgccggaaaaaggaccgttactccatccactagc cacgccaaactcgcaaaaacggccgagggcaccccatcgaaggatgcaaccaaggcgatg cctgctaaagtcctggcagacgaggacttcccggcccttggctcgccaaaacctgctacg gcaacgacatcgacggctgttcctcctccaaagctgacagccgaaaaggcgacagcttcc aagcctaagaagtctatcgctgagcgcgctgccgagaaggcactggctaagctggagaaa gaggagaaggagaggaaggaaaaggagaagctcaagaaggagaaggaagagaaagaagcc aaggagagagaaaaggaaaaggggaaggagaaggagaaggaggagaagtccaaggataag ggcaaggaaaacaaggaaaaggagcccgagaagggaaagcctgcggtgaaagaggctttt aagccagtagcaccagctcctgagaaggcacttgaaagggcatccgaaaaggccgctgac aagaaagcggatatgcgcccgactccaggtatccttgacattactgcagctacaaggacg gcgaaggtcatcaagattgtcgacgcgccaacgcccagcgacaagtctgccgccgccgac aaggatgccaacttcccggcttttactactcctacccccgtttcagccccttcgcctgtt acgcgggttgcgccgaagacacttcgtgtggtttcgacgcccaagacagaatcaccgtcc acaccggtgttggctgcgcccgtttccaagcctgttgctacgcttgcaatccgtccagag actcccgcgagcgagatgatctcggatagtgcctcgatcatctcggcctctatctctgtg tctcgtgcgagttcgccgccgccgtccaagatcggatctgcccctgtccgaaccaagacc aagagccaacagcgcaaggagcgcaaggaggccttgaagaaagagtcggccagcattgca gctgccccggtcaagactgagccacctgaagagatcggccccatcacagcacgcaagaag aagcagaagaaggacaaggagaagccaagcagcaacaaagctatagcgtctgccagccgg cccgacacaccgactattaaggagaaggaaaaagaggaaaaagaaaaggagaaggagaag gagaaagtccaagagaaggagtcctctacctaccgctcgactgccggggagactactact ctcaccggcgagccggctccgaggaagctcgctgagctcaagcctaaaacaacggatcct tcaaaaccgcgaacgctcccgacccccgcttctgttttacatgagttgcagcgagccggg tttgtgtcgtccaacattgatgaactccccttcttcaagccggttacgagtcagctggac aagtcacatccgggtttgagagacctagccacacgcaattccatggcaccgactaagtcg atcgtcacggaggaagaccaggcgcagctgcttgctggaaaccctgtccgtaaagtggtc gatggtattcgcatcctgctgacgcccaatggtgactgcatccgcaatcttactccagaa gaggaagaccgtttccttgagttgcaacagcgcgtcgccgaggccgcgacgaaccctgcc tcgtgggtctcgtcacggcatgagaacacaggtggctttagcctcatcaaaggccgcgca gtgcctaatggccctccaagttacttccctcctgcccccggcgcgtacccctccgatccg gtgaacaagatccagcgggaggaggctatttactacattaaccagtacgtccttccgcgg ctcaaccttaacagtcgcgatgtgaccctgcctaagggtagttcatccaatggctctagc gccagtgcaagtgtctcttctgccgcccaagctgccgccagtttgaacagcgttgctccc tggctctatgccagcgtgagctcctcctctccacacgacacggaacctgctcccccggag ttgagctaccctggccccgtgggctctttctctgacccgcgtgatctccctgggcacgcg tcgtaccttgacgtgccgtccccagctgatggaaccaatgggactgttggcacaagctcc atgctcagcttcccctcgccaacaccgtttggtaatgtcccgctcatgagcctggaggat gctgaggctgcgttgtgcgctgcacgcaaggagaccgagaagctggagaagtcgctgatg cagctgatgaagaagaataagaagcttcttcttcagcagaccacaactgccacagcgacc gtgggagctggtgggggcggaggacattga

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