KEGG   Thermochaetoides thermophila: CTHT_0045080
Entry
CTHT_0045080      CDS       T03100                                 
Name
(RefSeq) putative exosome complex protein
  KO
K03679  exosome complex component RRP4
Organism
cthr  Thermochaetoides thermophila
Pathway
cthr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cthr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CTHT_0045080
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cthr03019]
    CTHT_0045080
Messenger RNA biogenesis [BR:cthr03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CTHT_0045080
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     CTHT_0045080
SSDB
Motif
Pfam: RRP4_S1 ECR1_N RRP40_S1 KH_6 ECR1_N_2
Other DBs
NCBI-GeneID: 18258546
NCBI-ProteinID: XP_006694896
UniProt: G0S9A0
Structure
LinkDB
Position
Unknown
AA seq 358 aa
MPITIHAPLPPPRLHDEDSDVDMSSDSDSSSEGGVPLTSNLPSRAKPKSSLFTTTKSSSD
IVTPGELITTSPQFMRGHGTYIPPGTTSIISSVAGTILRTNKLLSVRPLRARYTPEVGDL
VVGRIIEVQARRWRVDVGSTQFASLPLSAINLPGGILRKRTETDELQMRSFFSEGDLLVA
EVQGVYGDGGAVLHTRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTLEGANGAGLID
VVLGVNGYVWIAKHTEDGPGEDPNASTKQVGITNLEEGMSANMYSSQNDRIEAETMREIA
RLRGVVMALVENGLRVDEDMVMRGYREAVEMALVSPEGPEDVYLGGERGRQLAAALTA
NT seq 1077 nt   +upstreamnt  +downstreamnt
atgcctatcacaattcacgctcccctcccccccccacgtctccacgacgaggactctgac
gtcgacatgtcctccgacagcgactcttcctccgaaggcggcgtccccctcacctccaac
ctcccctctcgcgccaaacccaagtcttccctcttcactaccacaaaatcctcgtcagac
atagtaacccccggcgaactaatcactacctccccccaattcatgcgcggccacggcacc
tacatcccccccggcacaaccagcatcatctcctcggtcgcgggcactatcctccgcacc
aacaaactcttgtctgtccgccccctccgggcgcgctacaccccagaggtaggcgacctc
gtcgtgggccgcatcatcgaagttcaggcccgccggtggcgggttgatgtggggagtacg
cagttcgcgtccctgccgctgagtgcgattaatctgccggggggtatactcaggaagagg
acggagacggacgagctgcagatgaggagtttcttctccgaaggagacctgttagtggcg
gaggtgcagggggtgtatggcgacggcggggccgtgctacacacgcgctcgctcaaatac
gggaagttgcgcaacggggtgtttgtcgccgtgtctggcatgggcggaggaggcggtgtt
gtccgctcacggcgacaagtctggacgttggaaggggccaacggcgcgggattgattgac
gtcgtgctgggggtgaatgggtatgtgtggatcgcgaagcatacggaggatggccccggg
gaggatcccaacgctagtaccaagcaggtggggattaccaaccttgaagaaggcatgagt
gccaatatgtacagcagtcaaaatgatcggatcgaggcagagaccatgcgggagattgcc
aggttgaggggggtcgtgatggcgttggtggagaatgggctcagggtggatgaggatatg
gttatgagggggtatagggaggcggtcgagatggcgcttgtgtcgcccgaggggccggag
gatgtctaccttgggggggagagagggaggcagttggctgccgctttgactgcttaa

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