Thermochaetoides thermophila: CTHT_0045080
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Entry
CTHT_0045080 CDS
T03100
Name
(RefSeq) putative exosome complex protein
KO
K03679
exosome complex component RRP4
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTHT_0045080
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0045080
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CTHT_0045080
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CTHT_0045080
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
ECR1_N
RRP40_S1
KH_6
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
18258546
NCBI-ProteinID:
XP_006694896
UniProt:
G0S9A0
Structure
PDB
PDBj
LinkDB
All DBs
Position
Unknown
AA seq
358 aa
AA seq
DB search
MPITIHAPLPPPRLHDEDSDVDMSSDSDSSSEGGVPLTSNLPSRAKPKSSLFTTTKSSSD
IVTPGELITTSPQFMRGHGTYIPPGTTSIISSVAGTILRTNKLLSVRPLRARYTPEVGDL
VVGRIIEVQARRWRVDVGSTQFASLPLSAINLPGGILRKRTETDELQMRSFFSEGDLLVA
EVQGVYGDGGAVLHTRSLKYGKLRNGVFVAVSGMGGGGGVVRSRRQVWTLEGANGAGLID
VVLGVNGYVWIAKHTEDGPGEDPNASTKQVGITNLEEGMSANMYSSQNDRIEAETMREIA
RLRGVVMALVENGLRVDEDMVMRGYREAVEMALVSPEGPEDVYLGGERGRQLAAALTA
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgcctatcacaattcacgctcccctcccccccccacgtctccacgacgaggactctgac
gtcgacatgtcctccgacagcgactcttcctccgaaggcggcgtccccctcacctccaac
ctcccctctcgcgccaaacccaagtcttccctcttcactaccacaaaatcctcgtcagac
atagtaacccccggcgaactaatcactacctccccccaattcatgcgcggccacggcacc
tacatcccccccggcacaaccagcatcatctcctcggtcgcgggcactatcctccgcacc
aacaaactcttgtctgtccgccccctccgggcgcgctacaccccagaggtaggcgacctc
gtcgtgggccgcatcatcgaagttcaggcccgccggtggcgggttgatgtggggagtacg
cagttcgcgtccctgccgctgagtgcgattaatctgccggggggtatactcaggaagagg
acggagacggacgagctgcagatgaggagtttcttctccgaaggagacctgttagtggcg
gaggtgcagggggtgtatggcgacggcggggccgtgctacacacgcgctcgctcaaatac
gggaagttgcgcaacggggtgtttgtcgccgtgtctggcatgggcggaggaggcggtgtt
gtccgctcacggcgacaagtctggacgttggaaggggccaacggcgcgggattgattgac
gtcgtgctgggggtgaatgggtatgtgtggatcgcgaagcatacggaggatggccccggg
gaggatcccaacgctagtaccaagcaggtggggattaccaaccttgaagaaggcatgagt
gccaatatgtacagcagtcaaaatgatcggatcgaggcagagaccatgcgggagattgcc
aggttgaggggggtcgtgatggcgttggtggagaatgggctcagggtggatgaggatatg
gttatgagggggtatagggaggcggtcgagatggcgcttgtgtcgcccgaggggccggag
gatgtctaccttgggggggagagagggaggcagttggctgccgctttgactgcttaa
DBGET
integrated database retrieval system