Thermochaetoides thermophila: CTHT_0046170
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Entry
CTHT_0046170 CDS
T03100
Name
(RefSeq) putative transcription protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CTHT_0046170
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cthr03019
]
CTHT_0046170
Messenger RNA biogenesis [BR:
cthr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CTHT_0046170
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CTHT_0046170
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
EAD9
Cep57_MT_bd
WKF
Transcrip_reg
DUF1192
DUF7310
Motif
Other DBs
NCBI-GeneID:
18258655
NCBI-ProteinID:
XP_006694997
UniProt:
G0S9K1
LinkDB
All DBs
Position
Unknown
AA seq
694 aa
AA seq
DB search
MAARKLQQEVDKCFKKVAEGVSEFEAIYEKIEQSTNQAQKEKLEDQLKREIKKLQRLRDQ
IKTWAASNDIKDKAPLLEQRRLIETQMEKFKAVEKAMKTKAYSKEGLSAAAKLDPKEQAK
IEASEFLSNMVDELEQQIETLEAESESLQATMKKGKGHAAKAERVAEIERIIDRHKWHQG
KLELIRRSLENGGVDAEQVNDLEESIKYYVSDGMNGDFMEDEGMYDDLSLQDEEDAYGMN
QDNDKTSSQDNQSIQSSKEKKEEEQEAEQPEKPSKPAPALSGKQRAAVEAATNAGRRPSN
QLKSPLPTLATVHTTSSSNLSNGTSGPQMKPAAVPSRLAGEGLKYASAAAAAAANEKNNV
GIAPLPPPPANAPGGPGPQGRISTTNSPRVPSSQPAGQDKASTAGSSSTVTPAKAGARSK
AAAQPPAQAEAESSKATAQTNGASNVKPSQEAEEEEPIYHLPPSLQDLVDSYEISKKRAA
ALSSPSTQRMQAVSNASKPSALDGEPPRSYQPEVRFYSHTRYPQEPLPIFDDPRLYSRID
SDTLFYVFYYKQGTYQQYLAARALKDQSWRFHKQYQTWFQRHEEPKQITEEFEKGTYRFF
DYESTWMNRRKADFEFHYKYLEDELVHLNTGQSVMALRYRRLSSKIPPVNWEDPPGYMDL
AMLGITSSRNDETSREFDAVWYRNEAMWDKSDAA
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcggcacgaaaactccagcaagaagtcgacaagtgcttcaagaaggtggctgaaggc
gtgtccgagttcgaggccatctatgagaagatcgagcagtcgaccaaccaggcgcaaaaa
gaaaagcttgaggaccagctcaagcgtgaaatcaagaagctgcagaggttgcgcgaccag
atcaagacatgggcggccagcaatgacatcaaggataaggctccattactggagcagcga
cggctgatcgagacgcaaatggagaagttcaaggcggtcgagaaggccatgaagaccaag
gcgtactcgaaagaggggctgtcagccgccgccaagctggaccccaaggaacaggccaag
atcgaggccagcgagttcctgagcaacatggtcgatgagctggagcagcagattgagacg
ctcgaggccgagagcgagtcattacaagcgaccatgaagaagggcaaagggcacgctgct
aaggccgaacgtgtcgccgagattgaacggatcatcgaccgacacaagtggcatcagggc
aagctagagctgatcagacggtctctcgagaacggtggggtagatgccgagcaagtcaac
gacctggaggaaagcattaagtactatgtttccgacggcatgaacggcgacttcatggaa
gatgaaggcatgtacgatgatctgagcttacaggacgaagaggacgcgtatggaatgaac
caggacaacgacaagacctcctcgcaagacaaccagtcgatacagtcgagcaaagaaaag
aaggaggaggaacaggaggctgagcagcccgaaaaaccatcaaaaccggcccctgctctg
tctgggaagcaacgagcggcagttgaggcggccacaaatgccgggagacgaccgtcgaac
cagctcaagtcacccctcccaacgttggctactgtacatacgacatcatcgtccaacctt
agcaatggaacttctggacctcagatgaagccggcagcggtaccgagcaggttggcgggc
gagggtctgaagtacgccagcgcagcagcagccgcagctgcgaacgagaagaacaatgtt
ggcattgcaccattaccaccaccgccagcaaacgctccgggcggtccagggccacaggga
agaatcagcaccactaactcgccacgggtcccctcctcacaaccggctgggcaagacaag
gcaagcactgcggggagttcgtctacagttacgccggcaaaggcgggggcaagaagtaag
gctgcggcacagccgccggcccaagccgaggcagaatcgtcgaaagcgacagcgcagacg
aatggtgcaagcaacgtcaagccgagccaagaagcagaagaggaggaaccaatatatcac
ttgccaccgtctctacaggacttagtagattcttacgaaatctcgaagaagagagccgcc
gctctgagctcgccatcaacacaacgaatgcaggctgtgtcgaatgcgagcaagccgtcc
gccctggatggcgaaccgccgcgaagctatcagccggaggttaggttttactcgcataca
cgctatccacaagagcccctgccgatcttcgacgacccgaggttgtactcgcgcattgac
tccgacacgctcttctacgtcttttactacaagcagggcacctaccagcaatatctggca
gcgcgcgccctcaaggaccagagttggagattccacaagcaatatcagacttggttccag
agacacgaggagcccaagcagattactgaggaattcgagaaggggacatatcgtttcttt
gactacgagagcacatggatgaaccggaggaaggcagactttgagttccattataagtac
ctcgaagacgagcttgtccacttgaacaccggtcagtcagtcatggctttgcgctatcgg
agactaagcagcaagatcccacctgtcaattgggaggaccctcccggctacatggatttg
gccatgttgggcatcacatcatccaggaacgatgagacttctagagaatttgacgctgtg
tggtatcggaatgaggcgatgtgggataaaagtgatgctgcttag
DBGET
integrated database retrieval system
