Thermochaetoides thermophila: CTHT_0051060
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Entry
CTHT_0051060 CDS
T03100
Name
(RefSeq) pre-mRNA splicing factor prp1-like protein
KO
K12855
pre-mRNA-processing factor 6
Organism
cthr
Thermochaetoides thermophila
Pathway
cthr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cthr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CTHT_0051060
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cthr03041
]
CTHT_0051060
Spliceosome [BR:
cthr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CTHT_0051060
Complex C
U5 SnRNP specific factors
CTHT_0051060
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_14
PRP1_N
TPR_19
HAT_PRP39_N
TPR_16
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Suf
TPR_2
HAT_Syf1_CNRKL1_C
TPR_CcmH_CycH
TPR_8
TPR_17
TPR_15
TPR_9
TPR_11
ARM_TT21
TPR_1
NatA_aux_su
ARM_TT21_5th
TPR_12
TPR_21
ARM_TT21_2nd
ARM_TT21_C
ChAPs
TPR-S
Motif
Other DBs
NCBI-GeneID:
18259144
NCBI-ProteinID:
XP_006695449
UniProt:
G0SDA3
LinkDB
All DBs
Position
Unknown
AA seq
920 aa
AA seq
DB search
MSVRRDFLSQPAPENYVAGLGRGATGFTTRSDLGPARDNEEAIKAAVAKRQAQLGLIKDG
KNDLDLDDEDDGRYGDPDNEVGLFAGGIYEKDDEEADRIWKEVDDRMARRRQKWREAREK
AEREEYERKFPKIQQQFAGLKRALEAVTEEEWANLPDPKDLTGRTKRARQARMQRFYAVP
DSVLAAARDQGQFGTTVVEDGTATEVNKDGTVTDFAKIGAARDKVLRARLEQQSQSSGIA
TAGSATSIDPKGYLTSLANASVGEQSIGDIEQFRKMLKSAVDSNPKQAASWIAAARLEIA
AGKPGAARALIAKGCQHCPKSEDIWLENIHINDNRNAKVIAAQAIQANPHSVKLWVEAMK
LENDVRSKKKVIRRALDHNPTSEALWKEAVNLEEDPADARMLLAKATELIPESLDLWLAL
ARLETPDNARKVLNKAVKKLPSSHELWIAAARLEEQLGEGTKRPVMKNAVKFLAKQNAMP
KREEWIAEAEKCEEEGAVVTCASIIEETLGWGLDEDDDRKEIWMEDAKGCISRERFHTAR
AIYAYALRVFPNSRSLYLAAVELEREHGTKEDLERALEKAVEACPHVEAFWLMLAKEKSG
EINEARKVLARAFKQNPDNEDIWLAAVKLEADNGHVDQARELLRTARQNAPTDRVWMRSV
AFERQQGNPQAALELVQDALRLFPNAPKLWMMKGQIYEDLGKIELARDAYSGGVRAVPSS
VPLWLLYSRLEERAGNVVKARSVLDRARTAVPKNPELWTELIRVERRAGNLSQARALMAQ
ALQQMPRSGLLWAERILYLEPRTQRKALITEAIKKVEDDPILQVTAARILWAERKLDRAQ
NWFERALLLDRDLGDTWAWYYRFLCQHGTEEKRKELIAKCVLNDPRHGEVWQRVAKDPRN
AGKKTEEVLELVAQQLGQAV
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atgtcggtccgacgcgacttcctcagccaaccggcgcccgaaaactacgtcgccggtctg
ggacgtggcgctaccggcttcacgacccgatccgaccttggtcctgcgcgcgacaacgag
gaggccatcaaggccgccgtcgccaagcgtcaagcccagttggggctcataaaggatggg
aagaacgatcttgatctggatgatgaggatgatggacggtatggggacccggataatgag
gtgggactgtttgctggtgggatatacgagaaggatgatgaggaggcagatcggatttgg
aaggaggtggatgatcggatggcgaggagacgacagaagtggcgcgaagcaagggagaag
gcggagcgggaggagtatgagaggaagttccctaagattcagcagcagtttgctgggctg
aagagggcgctagaggcagttaccgaggaggagtgggcgaatttgcccgatccgaaggac
ttgacgggacgaacgaagagagcaaggcaggcgaggatgcagcggttttatgccgtgccg
gatagcgtgcttgctgcggcgagggatcaagggcagtttggcactacagtggtcgaagat
ggcacggcaactgaagtcaacaaggatgggacagtcacagatttcgcgaagattggcgcg
gccagagacaaagtgctgcgcgcgaggctggaacagcagagccaaagcagcgggattgcg
acggccggcagcgcaacgagtatcgatccaaagggataccttacctcattggcgaacgcc
agtgttggtgagcagagcatcggcgatatcgaacagttccgaaagatgctcaagtcagca
gtagactcgaacccgaagcaagcggcaagctggatcgcggcggcacgtttagaaattgcg
gctgggaagcctggtgcggcgcgcgcgcttattgcaaagggctgccaacactgccccaag
agcgaggatatctggctggagaacatccacatcaatgacaaccgtaacgctaaggtcatt
gctgcgcaggcgatccaggctaacccacactcggtcaagctgtgggttgaggcgatgaag
ctcgagaacgatgtgcgctcgaagaaaaaggtcattcgtcgtgcgctggatcataatcct
acatcagaagccctgtggaaggaggcagttaatctcgaagaggacccggccgacgccagg
atgctgctcgccaaagcaacagaactcatccctgagtcgctcgatctctggctggcgctt
gctcgcctcgagacacccgataacgcgcgcaaggtgctcaataaggctgtcaagaagcta
cccagctcgcatgagctttggattgcggccgcaagactggaggagcaacttggcgagggc
accaagaggccagtgatgaagaatgccgtgaagttcctggccaagcagaacgccatgccc
aagcgggaagagtggattgctgaggcggagaagtgcgaagaagagggcgctgtggttact
tgcgcaagcatcatcgaagaaacgctcggctggggtctcgacgaggacgacgaccgcaaa
gaaatctggatggaagatgccaagggctgcatctcccgcgaaaggttccacacagcgcgc
gcaatttatgcctacgctttacgtgtcttccccaactcacgatccctctacctcgctgct
gtcgagctcgagcgcgaacacggcacgaaagaggacctcgagcgcgcgctggaaaaggcc
gtcgaagcctgcccgcatgttgaggccttctggcttatgcttgccaaggagaagtccggc
gagattaatgaagcccgaaaggttcttgcccgcgcgttcaagcagaatcccgataacgag
gacatctggctggccgctgttaagctcgaggctgataacgggcatgtggaccaggcgagg
gagttgctgcgcacagccaggcagaacgccccgacggatcgcgtctggatgcgcagcgtc
gcgttcgaacgacagcaaggcaatccgcaggcggcgttggagctggtacaggatgccttg
cggttgttcccgaacgcacccaagctgtggatgatgaaggggcagatctacgaagacctg
ggcaagatcgagctggcgcgggatgcctactctggcggtgtgcgtgccgtcccgtcgagc
gtcccgctctggttgctctactctcgtcttgaagagcgcgcaggtaatgtcgtcaaggca
cgcagtgttctcgatcgtgccaggacagccgtgccgaagaaccctgagctgtggacggag
cttatcagagttgagcggagagcgggcaatctgtcccaggcgcgggcgctcatggcgcaa
gctttgcagcaaatgccgcgcagcggcttgctgtgggctgagaggattctgtaccttgag
ccccgtacccagcgcaaggcgctcatcaccgaagcgatcaagaaggtcgaggacgacccc
atcctgcaagtcaccgccgctcgcatcttgtgggccgaacgtaagcttgacagggcgcag
aactggtttgagcgggcgctcttactagacagggacttgggtgatacatgggcgtggtat
taccggttcctgtgccagcatggcacggaggagaagaggaaggagttgattgcgaagtgt
gtgctgaatgatcctagacatggagaggtttggcagagggtggctaaggatccgaggaat
gcgggcaagaagacggaggaagtgttggagttggttgcgcagcagttggggcaggctgtg
taa
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integrated database retrieval system
