Thermochaetoides thermophila: CTHT_0058480 Help Entry CTHT_0058480      CDS       T03100                                  Name (RefSeq) hypothetical protein   KO K03006   DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] Organism cthr  Thermochaetoides thermophila Pathway cthr03020   RNA polymerase cthr03420   Nucleotide excision repair Brite KEGG Orthology (KO) [BR:cthr00001]  09120 Genetic Information Processing   09121 Transcription    03020 RNA polymerase     CTHT_0058480   09124 Replication and repair    03420 Nucleotide excision repair     CTHT_0058480  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:cthr03021]     CTHT_0058480    03400 DNA repair and recombination proteins [BR:cthr03400]     CTHT_0058480 Enzymes [BR:cthr01000]  2. Transferases   2.7  Transferring phosphorus-containing groups    2.7.7  Nucleotidyltransferases     2.7.7.6  DNA-directed RNA polymerase      CTHT_0058480 Transcription machinery [BR:cthr03021]  Eukaryotic type   RNA polymerase II system    RNA polymerase II     Core subunits      CTHT_0058480 DNA repair and recombination proteins [BR:cthr03400]  Eukaryotic type   SSBR (single strand breaks repair)    NER (nucleotide excision repair)     TCR (transcription coupled repair) factors      DNA-directed RNA polymerase II complex       CTHT_0058480 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R Motif Other DBs NCBI-GeneID:  18259886 NCBI-ProteinID:  XP_006696168 UniProt:  G0SCU7 LinkDB All DBs Position Unknown AA seq 1756 aa AA seqDB search MANLIFAHSSAPLRTIKEIQFGLLSPEEIKAMSVCHILYPETMDETRTKPRDGGLNDPLL GSVDRQFKCKTCTENMSECPGHFGHIELARPVYHPGFIKRTKKLLEIVCHNCSRVLADRS DPQYAAAMKIRDPKIRFKRVWDICKSKRRCENDIPKQAEDGDYNPNGNAQEAPVGGHGGC GNAQPVIRQQALTLWAHYEHRDDDGVKTKEKKIITPEMALNIFRRMRDEEMIDIGLNISQ ARPEWMIITVLPVPPPPVRPSISMDGTGTGLRNEDDLTYKLGDIIRANGNVRQAIAEGSP QHIINDFENLLQYHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRV DFSARTVITGDANISLDEVGVPRSIARTLTYPETVTPFNIERLTQYVQNGPNEHPGARFV VRSDGTRIDLRHHRRASSIQLEYGWKVERHLIDGDYVIFNRQPSLHKESMMGHRVRVMPY STFRLNLSVTSPYNADFDGDEMNLHVPQTEETRAEVKELCMVPLNIVSPQRNGPLMGIVQ DTLAGVYKMCRRDVFLTKEQVMNLMLWVPDWDGIIPIPAILKPRPRWTGKQIVSMIIPKI INLHMGSDSPDKNHPFKDDGLLIQQGEIMYGLLSKKSVGASGGGIVHLCYNELGPQGAMD FLNGCQRVVNYWLLHNGHSIGIGDTIPDPKTIELVQKHINDEKAEVERLTKMATNNELEP LPGMNIRETFENKVSTALNMARDKAGTTTEKSLKDLNNAVTMARSGSKGSSINISQMTAL VGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLRGLTPSEFFFHAMAGREGL IDTAVKTAETGYIQRRLVKALEDAEAHYDGTVRNSLGDVIQFVYGEDGLDGIAIEKQRVD HINMSDKAFDKRFRLDVMDLEHSGRALDALEYGREMASDPEVQSLLDQEYEQLLADRQLV RQIQRRKMGEENIQLPLNVARIIENAKKLFKVDDTSRSDLTPKDVIPAVRALLERMVVVR GDDPISKEADYNSTILFKILLRSRLAFKRLACEQRINKLAFEHILGELENRWARSMVNPG EMVGVLAAQSIGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEILNVAKDIKTPSMVVYLD AENATQEDAKKMRNKVEHTSLRSVTAVTEIYYDPDITSTVIPEDFDMVESYFLIPDSSDQ ESIENQSRWLLRITLDRQKMLDKGLRVEDVAHKIKEEYKKDVAIIFSDNNAEEMVIRIRV VRQEDDKDEDGHKIIEDDVMLKRLEKHLLDNLTLRGVPGIERAFLNKGTKLAVLPDGSQI ANKDHPACQEWYLDTQGTALREVLQIEGVDTRRTSTNDLYQIVDVFGIEAARAALLQELT QVLAFDGSYVNHRHLALLVDVMTYRGSIAAVTRHGINRADTGALMRCSFEETVEILLEAA AVGELDDCRGISENVMLGQMAPMGTGHFDVLLDPKMLETVISDNSRMGLMPGMTIKGGEL EGAATPYDTGSPMADNGYLGSYSPTMGNFSPIQGAGSDSPTGFGTEYGGFGSSTVNPYAT SPRATSPFSTSPTSPFGGYGGYSPSSPAAGYSPTSPLIDAGGRYVSSPQFSPSSPSFSPT SPMLRPGSPTSPNYSPTSPSYSPASPAATRHYSPTSPQQFASPTSPSYSPTSPTYSPASP NLHATSPSYSPASPTWSPTSPDAYSPTSPSFHRSPGQQASPTSPGYSPTSPAFSPRTPGR GPSSGDQYSPTSPQND NT seq 5271 nt NT seq  +upstreamnt  +downstreamnt atggcgaacctcatcttcgcgcactcgagtgcgccgcttcgtacaatcaaggagatccag ttcggactcctgtcgcctgaggaaatcaaggcgatgagcgtgtgccacatcctctacccc gagacgatggacgagacgaggacgaagccccgcgacggtggtctcaacgatcctcttctt ggctctgtcgaccggcagttcaagtgcaagacgtgcactgaaaacatgtccgagtgtccc ggtcacttcggtcatattgagcttgcccggcctgtttaccaccccgggttcatcaagcgc acaaagaaattgctcgagattgtctgccacaactgtagtagggtgttggctgatcgctct gacccgcagtatgctgctgctatgaagatccgcgaccccaagatccgcttcaagcgcgtc tgggatatctgtaagagcaagcgacgttgtgagaacgatattcccaaacaggccgaggac ggcgactacaaccccaacggcaacgctcaggaagcacccgtcggtggccacggaggttgt ggcaacgcccagcccgtcattcgccagcaggctctcacattgtgggcccactacgagcac cgggatgatgatggtgttaaaactaaagagaagaaaatcatcacccctgaaatggccctc aacatcttccgccgcatgcgcgatgaggagatgatcgatattggcctcaacatctctcaa gcccgcccggagtggatgattatcacggttctgcctgtccctcctccgccggttcgccct agcatctcgatggatggtactggaacaggcctgcgcaacgaggacgacttgacgtacaag cttggcgatattatccgcgccaacggtaacgtccgccaggccatcgccgagggttcgccg caacacatcatcaacgactttgagaatcttcttcagtaccatgttgctacttacatggac aatgacatcgctggccagcctcaagcactccaaaagagcggccgtcctgtcaaggccatt cgtgcccgtttgaagggcaaggaaggtcgcttgcgcggtaacttaatgggaaagcgtgtc gacttctcggcgcgtactgtcattactggagatgcgaacatttccttggacgaggtcggc gtgccgcgaagcattgcccggactctgacctatcccgaaactgttacgcctttcaacata gagaggctcacacaatatgttcagaatggcccgaatgagcaccctggtgccaggtttgtt gtccgttctgatggtactcgcatcgaccttcgtcatcaccgccgtgccagctcgattcag ctcgagtacggttggaaggtcgagcgccacctcatcgacggcgattatgtcattttcaat cgtcagccctctttgcacaaggagtccatgatgggtcacagggtccgcgtcatgccttat tcgactttccgcctcaatctctctgtcacgtccccgtacaatgccgatttcgatggtgat gagatgaacttgcatgtccctcagactgaggaaactcgagctgaggtcaaggagctttgt atggtgcctttgaacatcgtctctccccagcgcaacggccctttgatgggtatcgttcaa gacaccctggccggcgtctacaagatgtgtcgccgtgacgtcttcctcaccaaagagcag gtcatgaatctcatgctttgggtacctgattgggatggtatcattcccattcccgcgatc ttgaagcctcgtccgcgctggactggcaagcagattgtcagcatgatcatcccaaagatc atcaaccttcatatgggttcggattcaccggataagaaccatccgtttaaggacgatggt cttctcatccagcagggagagatcatgtatggtctgctctccaagaagagtgttggtgct tccggcggcggcatcgtccatctctgctacaacgagctcggcccccaaggggccatggat ttcctcaatggctgccagcgagtggttaattattggcttctgcacaacggtcacagcata ggaattggtgacacgatcccagatcccaagaccatcgagctggttcagaaacacatcaat gatgagaaggccgaagtcgagcggctgaccaagatggccactaacaacgagcttgagccc ttgcccggtatgaacatccgcgagaccttcgagaacaaggtctcgacggcccttaacatg gcccgcgataaggctggcaccacgacagaaaagagtttgaaggacctcaacaacgccgtg acgatggcgcgctcgggttccaagggttcttccatcaacatctctcagatgacggccctg gttggtcaacagatcgttgaaggcaagcgtatcccgttcggcttcaagtatcggacgctc cctcacttcaccaaagacgattactcgcccgaggctcgtggtttcgttgagaactcgtat ctccgtggcttgacgccgtccgagttcttcttccatgccatggccggtagagaaggtctg atcgatactgcggtcaagaccgccgaaaccggttacatccagcgtaggttggttaaagcc ctcgaagatgctgaggcgcactacgacgggacagttcggaattctcttggtgatgtcatt cagtttgtgtatggcgaggacggcctcgatggtattgctatcgaaaagcagcgcgtcgat cacatcaacatgtccgataaggcctttgacaagagattccgcctggacgtcatggatctg gagcactcgggtcgtgccctcgatgccctcgagtatggccgtgaaatggccagcgatccg gaagttcagtcgctcctggatcaggaatatgaacagctcttggccgatcgccagttggtt cgtcaaattcaacgccgcaagatgggcgaagaaaatattcagcttcccctcaatgttgct cgcatcatcgagaacgcaaagaagctcttcaaggttgacgatacctcccgcagcgacctg acgcctaaggatgttatcccggctgttcgtgctctcctcgagcgcatggttgttgttcgc ggtgacgatcccatctcgaaggaggccgattacaactctaccatcttgttcaagatcctc ctgagatcccggcttgctttcaagcggctggcttgcgagcagagaatcaacaagttggcc tttgagcacattttgggtgaactggagaacaggtgggctcgatccatggtcaaccctggt gagatggtcggtgttctggctgcccaatccatcggtgagcccgctacgcagatgacactg aataccttccacttcgctggtgtgtcgtctaagaacgtcacccttggtgttcctcgtctc aaggaaattctcaacgttgcaaaggatattaagaccccgtccatggtggtctacctggat gctgagaacgccactcaggaggatgccaagaagatgcgtaacaaagttgagcacaccagc ctgcgttctgttactgcggtaacggagatctactatgatcccgacatcacttcgacggtc attcctgaggacttcgatatggtcgagtcttacttcctcatccctgattcatcagatcag gaatctatcgagaatcaatctcgttggctgctcaggattacccttgatcgtcagaagatg ctcgacaagggtctccgcgtcgaggacgttgcgcacaagatcaaggaggaatacaagaag gacgttgctatcattttcagcgacaacaacgccgaagaaatggttattcgtatccgcgtt gttcgccaggaggacgataaggatgaggacggccacaagatcatcgaggacgacgtcatg ctgaagcgtctcgagaaacatctccttgataacctgacgctgcgtggcgtaccaggtatc gagcgtgccttcttgaacaagggcaccaagctagctgtcctccctgatggctcacagatt gccaataaggaccatcccgcgtgccaggagtggtatctggatacgcagggtactgccctt cgtgaggttttgcagatcgagggcgttgatacaaggcgtacttcaaccaacgacctgtat cagatcgttgatgtcttcggcatcgaggccgctcgcgcagctcttctgcaggaattgacc caggtgcttgcgttcgacggttcttacgtcaaccaccgtcacttggctctgctggtcgac gtaatgacctaccgtggcagcattgcagctgttactcgtcacggcatcaaccgcgctgac actggtgccttgatgcggtgctcgttcgaagagaccgtcgagattcttctcgaggctgcc gctgtcggcgagctcgacgactgccgtggcatctctgagaatgttatgcttggccagatg gctcccatgggtaccggtcacttcgatgtccttctggatccgaagatgttggagaccgtc atctccgacaactctcgtatgggcctgatgcctggcatgacgatcaaaggcggtgagttg gagggtgccgcaactccgtacgacaccggctccccgatggcagacaacggttaccttggc agctattctccgaccatgggcaacttctcgcccatccagggtgctggttccgacagccca actggctttggcacggagtatggcggcttcggctcaagcacagtcaacccatatgcgacc agtcctcgtgctaccagtcccttctcgacgtcgcctacctcgccatttggcggttatggt ggctactccccatcctctcctgcagctgggtactctccgacgtcgccgcttatcgatgct ggcggtcgctacgtgtcaagcccacagttcagcccttcatctccatcattctcgcccacg tctcccatgctgcggcccggcagcccaaccagccccaactacagcccgacatcaccgagc tactcaccggcttcgcctgctgctacaaggcactactctcctacttcgccccagcagttc gcgtcaccgacgtcaccctcgtactctccgaccagccccacatacagcccggcatcgccg aacctgcatgccacatcaccatcctactcacctgcgtcaccaacttggtcacccacatct cccgatgcctactcgcctacaagcccgtccttccatcgctcgcctggacagcaggcatct cccactagcccgggttactcacccacttcccccgccttctctccaaggacgccgggtcgg ggcccatccagcggtgatcaatattcccctacctctccgcagaacgattaa

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